Browse Element(s) Details


OsAffx.20788.1.S1_at

Description tigr:9638.m00203
TID=OsAffx.20788.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC116601 Putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0297011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02940OsAffx.30249.1.S1_at11/1110+1198323..1199011hypothetical protein
LOC_Os10g02950NANA10+1200149..1200574hypothetical protein
LOC_Os10g02960NANA10+1201677..1206027retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02970OsAffx.20788.1.S1_at11/1110+1207807..1211176Leucine Rich Repeat family protein
LOC_Os10g02980Os.27263.1.S1_x_at11/1110+1218215..1225920formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g02980Os.47973.1.S1_x_at11/1110+1218215..1225920formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g02980OsAffx.32197.1.S1_x_at1/1110+1218215..1225920formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g02990OsAffx.30250.1.S1_at11/1110+1227626..1229808Leucine Rich Repeat family protein
LOC_Os10g03000Os.46012.3.S1_x_at10/1110+1232066..1233550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000Os.46012.2.S1_x_at9/1110+1232066..1233550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000Os.46012.3.S1_at4/1110+1232066..1233550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000Os.27088.1.A1_x_at4/1110+1232066..1233550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000Os.54691.1.S1_x_at1/1110+1232066..1233550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03010Os.38751.1.A1_at6/1110+1234850..1236279retrotransposon protein, putative, unclassified
LOC_Os10g03010OsAffx.28492.1.S1_at1/1110+1234850..1236279retrotransposon protein, putative, unclassified
LOC_Os10g03010OsAffx.10020.1.S1_x_at1/1110+1234850..1236279retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20788.1.S1_at--1005--2711Chr10:1208397..1208421 (25 bp)
AAGCACTATGTTATCTGCACCACGA
LOC_Os10g02970
OsAffx.20788.1.S1_at--1006--3331Chr10:1208377..1208401 (25 bp)
CACGACTGCAATCCACCAATAATTC
LOC_Os10g02970
OsAffx.20788.1.S1_at--127--3271Chr10:1208316..1208340 (25 bp)
CAACTTTGAAGGCTTATGTCTCAGA
LOC_Os10g02970
OsAffx.20788.1.S1_at--586--7931Chr10:1208277..1208301 (25 bp)
GGATTTTGAGACCTGATTCATCTAA
LOC_Os10g02970
OsAffx.20788.1.S1_at--357--31Chr10:1208253..1208277 (25 bp)
ATTGGAGTGCGCTAGCTGGTACATA
LOC_Os10g02970
OsAffx.20788.1.S1_at--892--5891Chr10:1208139..1208163 (25 bp)
GAGCTGTCCTATACATCTTTGGTGA
LOC_Os10g02970
OsAffx.20788.1.S1_at--995--10731Chr10:1208040..1208064 (25 bp)
TTGCAGCATCTGACTTCATCAAGGG
LOC_Os10g02970
OsAffx.20788.1.S1_at--1052--5571Chr10:1207995..1208019 (25 bp)
GAAATCCTGGATTCACGACCTTTAG
LOC_Os10g02970
OsAffx.20788.1.S1_at--193--12Chr07:5210333..5210354 (22 bp)
ATAGTTTCCCTCATTAAGGTGGTGT
NONE
OsAffx.20788.1.S1_at--962--10551Chr10:1207918..1207942 (25 bp)
TTCTTGCTTGAAAGCTTCTCCGCAA
LOC_Os10g02970
OsAffx.20788.1.S1_at--248--5011Chr10:1207879..1207903 (25 bp)
GCAGGAGGTCTACCAGACACTAATT
LOC_Os10g02970
Target Sequence 
AAGCACTATGTTATCTGCACCACGACTGCAATCCACCAATAATTCATCGAGATATAACCAGCAACAACATCTTACTTGAT
ACAACTTTGAAGGCTTATGTCTCAGATTTTGGTACAGCGAGGATTTTGAGACCTGATTCATCTAATTGGAGTGCGCTAGC
TGGTACATATGGCTACATAGCTCCTGAGCTGTCCTATACATCTTTGGTGACAGAGAAATGTGATGTGTATAGTTTCGGCA
TGGTTATGCTAGAGGTAGTGATTGGGAAGCACCCAAGAGATTTATTGCAGCATCTGACTTCATCAAGGGATCACAATATA
ACAATCAAGGAAATCCTGGATTCACGACCTTTAGCACCAACAACGACAGAAGAAGAAAACATAGTTTCCCTCATTAAGGT
GGTGTTTTCTTGCTTGAAAGCTTCTCCGCAAGCAAGACCAACAATGCAGGAGGTCTACCAGACACTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis