Browse Element(s) Details


OsAffx.6559.1.S1_at

Description tigr:9638.m00196
TID=OsAffx.6559.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0290011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02870OsAffx.18097.1.S1_at11/1110+1144096..1145803hypothetical protein
LOC_Os10g02880Os.7507.1.S1_at11/1110+1147064..1148630O-methyltransferase family protein, expressed
LOC_Os10g02880Os.46511.1.S1_at1/1110+1147064..1148630O-methyltransferase family protein, expressed
LOC_Os10g02890OsAffx.30248.1.S1_at11/1110+1164500..1164997hypothetical protein
LOC_Os10g02900OsAffx.6559.1.S1_at11/1110+1167712..1168101hypothetical protein
LOC_Os10g02910OsAffx.424.1.S1_at11/1110+1170494..1172802hAT family dimerisation domain containing protein
LOC_Os10g02920Os.23286.1.A1_at10/1110+1173962..1175936Cytochrome b561 family protein, expressed
LOC_Os10g02920Os.40855.5.S1_x_at2/1110+1173962..1175936Cytochrome b561 family protein, expressed
LOC_Os10g02930Os.46070.2.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.1.S1_x_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.3.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.1.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6559.1.S1_at--375--2391Chr10:1167763..1167787 (25 bp)
AAACGGCGTGGCATGGCCTCGGATT
LOC_Os10g02900
OsAffx.6559.1.S1_at--178--4431Chr10:1167799..1167823 (25 bp)
GCCATGTGGATGCTGACGCTCGGGA
LOC_Os10g02900
OsAffx.6559.1.S1_at--884--9991Chr10:1167828..1167852 (25 bp)
TAGCGCGGAACCTAAGCAGGTGCTC
LOC_Os10g02900
OsAffx.6559.1.S1_at--867--5011Chr10:1167843..1167867 (25 bp)
GCAGGTGCTCATCTATGTTGTCGAG
LOC_Os10g02900
OsAffx.6559.1.S1_at--256--4831Chr10:1167849..1167873 (25 bp)
GCTCATCTATGTTGTCGAGGATATG
LOC_Os10g02900
OsAffx.6559.1.S1_at--259--10271Chr10:1167881..1167905 (25 bp)
TTTGCATGGATGCTGTCGCCGTCAG
LOC_Os10g02900
OsAffx.6559.1.S1_at--508--3371Chr10:1167924..1167948 (25 bp)
CACCTCCGATGTGCGCGGCAAATGG
LOC_Os10g02900
OsAffx.6559.1.S1_at--631--5131Chr10:1167941..1167965 (25 bp)
GCAAATGGCGCCACTGCAGAGACGC
LOC_Os10g02900
OsAffx.6559.1.S1_at--6--10651Chr10:1168016..1168040 (25 bp)
TTCCCAAAGGGACCAACCTGCGCGT
LOC_Os10g02900
OsAffx.6559.1.S1_at--647--2631Chr10:1168030..1168054 (25 bp)
AACCTGCGCGTGGTCATGGCGTTCC
LOC_Os10g02900
OsAffx.6559.1.S1_at--1024--8591Chr10:1168040..1168064 (25 bp)
TGGTCATGGCGTTCCCGCTCGTTGG
LOC_Os10g02900
Target Sequence 
AAACGGCGTGGCATGGCCTCGGATTGGCCGGCGGTGGCCATGTGGATGCTGACGCTCGGGAGGCGTAGCGCGGAACCTAA
GCAGGTGCTCATCTATGTTGTCGAGGATATGGAAGAAGTTTGCATGGATGCTGTCGCCGTCAGCGTCGTCGTCCCCGCCC
CCACCTCCGATGTGCGCGGCAAATGGCGCCACTGCAGAGACGCCTCACTTCCTTTCCCCGACCACGGCGAGAGCGAGTGC
ACGGCGGCCTTCCTTCCCAAAGGGACCAACCTGCGCGTGGTCATGGCGTTCCCGCTCGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis