Browse Element(s) Details


OsAffx.30248.1.S1_at

Description tigr:9638.m00195
TID=OsAffx.30248.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0289011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02870OsAffx.18097.1.S1_at11/1110+1144096..1145803hypothetical protein
LOC_Os10g02880Os.7507.1.S1_at11/1110+1147064..1148630O-methyltransferase family protein, expressed
LOC_Os10g02880Os.46511.1.S1_at1/1110+1147064..1148630O-methyltransferase family protein, expressed
LOC_Os10g02890OsAffx.30248.1.S1_at11/1110+1164500..1164997hypothetical protein
LOC_Os10g02900OsAffx.6559.1.S1_at11/1110+1167712..1168101hypothetical protein
LOC_Os10g02910OsAffx.424.1.S1_at11/1110+1170494..1172802hAT family dimerisation domain containing protein
LOC_Os10g02920Os.23286.1.A1_at10/1110+1173962..1175936Cytochrome b561 family protein, expressed
LOC_Os10g02920Os.40855.5.S1_x_at2/1110+1173962..1175936Cytochrome b561 family protein, expressed
LOC_Os10g02930Os.46070.2.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.1.S1_x_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.3.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.1.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30248.1.S1_at--962--7671Chr10:1164586..1164865 (25 bp)
GGGTAGCGTCTACAAAGCTGCACTT
LOC_Os10g02890
OsAffx.30248.1.S1_at--723--9991Chr10:1164848..1164868 (21 bp)
TAGCGTCTACAAAGCTGCACTTCTG
LOC_Os10g02890
OsAffx.30248.1.S1_at--467--2691Chr10:1164855..1164879 (25 bp)
AAGCTGCACTTCTGTTAATATCTCA
LOC_Os10g02890
OsAffx.30248.1.S1_at--547--5111Chr10:1164860..1164884 (25 bp)
GCACTTCTGTTAATATCTCAATGGA
LOC_Os10g02890
OsAffx.30248.1.S1_at--1133--231Chr10:1164872..1164896 (25 bp)
ATATCTCAATGGAAGGATGACAGCC
LOC_Os10g02890
OsAffx.30248.1.S1_at--9--7991Chr10:1164886..1164910 (25 bp)
GGATGACAGCCAGGATGACGGCCAT
LOC_Os10g02890
OsAffx.30248.1.S1_at--8--3391Chr10:1164892..1164916 (25 bp)
CAGCCAGGATGACGGCCATGTCAAA
LOC_Os10g02890
OsAffx.30248.1.S1_at--1101--8931Chr10:1164901..1164925 (25 bp)
TGACGGCCATGTCAAACATGAGGAT
LOC_Os10g02890
OsAffx.30248.1.S1_at--383--8871Chr10:1164919..1164943 (25 bp)
TGAGGATGGCAAGACCCGCAAAGTT
LOC_Os10g02890
OsAffx.30248.1.S1_at--115--5171Chr10:1164927..1164951 (25 bp)
GCAAGACCCGCAAAGTTGACAACAA
LOC_Os10g02890
OsAffx.30248.1.S1_at--866--6651Chr10:1164941..1164965 (25 bp)
GTTGACAACAAACGCTTTGCTCATA
LOC_Os10g02890
Target Sequence 
GGGTAGCGTCTACAAAGCTGCACTTCTGTTAATATCTCAATGGAAGGATGACAGCCAGGATGACGGCCATGTCAAACATG
AGGATGGCAAGACCCGCAAAGTTGACAACAAACGCTTTGCTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis