Browse Element(s) Details


OsAffx.22387.1.S1_at

Description tigr:9635.m01586
TID=OsAffx.22387.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1591011/11hypothetical protein
LOC_Os01g339701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g242001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g211701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g291001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g233201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g301101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g179601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g474461/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15880Os.9227.1.S1_a_at11/117+9219706..9225512Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os07g15880OsAffx.3846.1.S1_at1/117+9219706..9225512Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os07g15890Os.41248.4.S1_x_at1/117+9228610..9233991retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g15900NANA7+9239530..9241129hypothetical protein
LOC_Os07g15910OsAffx.22387.1.S1_at11/117+9244892..9246132hypothetical protein
LOC_Os07g15920OsAffx.28469.1.S1_at11/117+9248139..9248588hypothetical protein
LOC_Os07g15930OsAffx.28470.1.S1_at11/117+9250697..9254014Legume lectins beta domain containing protein, expressed
LOC_Os07g15940Os.50228.1.S1_at10/117+9258849..9261135receptor like protein kinase, putative, expressed
LOC_Os07g15950OsAffx.22386.1.S1_x_at11/117+9264516..9265010hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22387.1.S1_at--1139--10111Chr07:9245434..9245458 (25 bp)
TATCGTGCGTCATATATTGTAGGAG
LOC_Os07g15910
OsAffx.22387.1.S1_at--1063--87310Chr11:8244614..8244637 (24 bp)
TGTAATCGAGCAACACTTGGTGACA
NONE
OsAffx.22387.1.S1_at--877--911Chr07:9245261..9245285 (25 bp)
AGGCTACACAAACTGGTCACACCAT
LOC_Os07g15910
OsAffx.22387.1.S1_at--259--5971Chr07:9245235..9245259 (25 bp)
GAGAAATCCCTGCAAGCTTCCAAGT
LOC_Os07g15910
OsAffx.22387.1.S1_at--413--1531Chr07:9245221..9245245 (25 bp)
AGCTTCCAAGTTCCCAACCAAGAGA
LOC_Os07g15910
OsAffx.22387.1.S1_at--262--10252Chr08:18379245..18379269 (25 bp)
TTTGGAGGAGATGTTGCGCCATGCT
LOC_Os08g30110
OsAffx.22387.1.S1_at--1032--5431Chr07:9245023..9245047 (25 bp)
GAACCTGAGACAATTTTCACTGGCG
LOC_Os07g15910
OsAffx.22387.1.S1_at--692--10491Chr07:9245008..9245032 (25 bp)
TTCACTGGCGGCTCCCTTGAGAAAG
LOC_Os07g15910
OsAffx.22387.1.S1_at--571--291Chr07:9244971..9244995 (25 bp)
ATAGATCTTCTCTAGTGGTTGGACT
LOC_Os07g15910
OsAffx.22387.1.S1_at--1074--6611Chr07:9244954..9244978 (25 bp)
GTTGGACTCCGCCAGAGAAAACTCT
LOC_Os07g15910
OsAffx.22387.1.S1_at--40--1431Chr07:9244939..9244963 (25 bp)
AGAAAACTCTACATCTTCACTGGCC
LOC_Os07g15910
Target Sequence 
TATCGTGCGTCATATATTGTAGGAGTCAATATATTTATGAAAGCTGCGAAGAAAAATGCTGTAGCTAAGAAGACAAAGGA
AATTAAATGTCCATGCAAACACTGCAAAAATCAGAAATTTTGGAATGATTCATCTGTAATCGAGCAACACTTGGTGACAC
ATGGATTTGTTGAAGGCTACACAAACTGGTCACACCATGGAGAAATCCCTGCAAGCTTCCAAGTTCCCAACCAAGAGATA
GTACAGGATGAAGTGTTCAATGATTGGAATTTCATGGTAGTAGAAGAAGAATCGGTTGATGATGATGGTTATGACACAGC
TAATGATGTTGATGATGGTCATGTCACAGTAGATGATGCTAATGGTAGTGATGGAACTGCTTTTGATTTGGAGGAGATGT
TGCGCCATGCTGAACCTGAGACAATTTTCACTGGCGGCTCCCTTGAGAAAGCCGCTAGCGAAAATAGATCTTCTCTAGTG
GTTGGACTCCGCCAGAGAAAACTCTACATCTTCACTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis