Browse Element(s) Details


OsAffx.3846.1.S1_at

Description tigr:9632.m01969
TID=OsAffx.3846.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2143011/11expressed protein
LOC_Os07g158801/11Mitochondrial prohibitin complex protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21400NANA4+12066639..12069405retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21410NANA4+12072015..12077145retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g21420NANA4+12079787..12081019retrotransposon protein, putative, unclassified
LOC_Os04g21430OsAffx.3846.1.S1_at11/114+12094181..12095109expressed protein
LOC_Os04g21440OsAffx.26046.1.S1_at1/114+12099320..12100374Transposable element protein, putative, Retrotrans_gag, expressed
LOC_Os04g21450NANA4+12101955..12103602hypothetical protein
LOC_Os04g21460OsAffx.13906.1.S1_at11/114+12114377..12115331hypothetical protein
LOC_Os04g21470OsAffx.26085.1.S1_at11/114+12118172..12118648hypothetical protein
LOC_Os04g21470OsAffx.26085.1.S1_x_at11/114+12118172..12118648hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3846.1.S1_at--938--9171Chr04:12094857..12094881 (25 bp)
TGCCGAGTGCCGCTGCAACGCACGC
LOC_Os04g21430
OsAffx.3846.1.S1_at--508--4531Chr04:12094831..12094855 (25 bp)
GCCGCCTGGCTCCTTGCAAATTTAG
LOC_Os04g21430
OsAffx.3846.1.S1_at--6--4471Chr04:12094828..12094852 (25 bp)
GCCTGGCTCCTTGCAAATTTAGGGT
LOC_Os04g21430
OsAffx.3846.1.S1_at--805--3912Chr07:9223589..9223631 (24 bp)
CTGGCTCCTTGCAAATTTAGGGTTT
LOC_Os07g15880
OsAffx.3846.1.S1_at--121--4791Chr04:12094823..12094847 (25 bp)
GCTCCTTGCAAATTTAGGGTTTGGG
LOC_Os04g21430
OsAffx.3846.1.S1_at--138--7932Chr11:7418879..7418921 (25 bp)
GGATTTTTGTTTCGAAATGGGCTCA
NONE
OsAffx.3846.1.S1_at--181--10771Chr04:12094763..12094787 (25 bp)
TTGTTTCGAAATGGGCTCAGTTGCG
LOC_Os04g21430
OsAffx.3846.1.S1_at--830--2292Chr12:1132883..1132907 (25 bp)
AAATGGGCTCAGTTGCGGCCCAAGT
NONE
OsAffx.3846.1.S1_at--302--791Chr04:12094753..12094777 (25 bp)
ATGGGCTCAGTTGCGGCCCAAGTAG
LOC_Os04g21430
OsAffx.3846.1.S1_at--666--9651Chr04:12094747..12094771 (25 bp)
TCAGTTGCGGCCCAAGTAGAATGCG
LOC_Os04g21430
OsAffx.3846.1.S1_at--555--4171Chr04:12094737..12094761 (25 bp)
CCCAAGTAGAATGCGGGCCAAGTGA
LOC_Os04g21430
Target Sequence 
TGCCGAGTGCCGCTGCAACGCACGCCGCCGCCTGGCTCCTTGCAAATTTAGGGTTTGGGATTGGGGATTTTGGGAGCTGC
CTGGGAGGGGATTTTTGTTTCGAAATGGGCTCAGTTGCGGCCCAAGTAGAATGCGGGCCAAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis