Browse Element(s) Details


OsAffx.28470.1.S1_at

Description tigr:9635.m01588
TID=OsAffx.28470.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1593011/11Legume lectins beta domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15890Os.41248.4.S1_x_at1/117+9228610..9233991retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g15900NANA7+9239530..9241129hypothetical protein
LOC_Os07g15910OsAffx.22387.1.S1_at11/117+9244892..9246132hypothetical protein
LOC_Os07g15920OsAffx.28469.1.S1_at11/117+9248139..9248588hypothetical protein
LOC_Os07g15930OsAffx.28470.1.S1_at11/117+9250697..9254014Legume lectins beta domain containing protein, expressed
LOC_Os07g15940Os.50228.1.S1_at10/117+9258849..9261135receptor like protein kinase, putative, expressed
LOC_Os07g15950OsAffx.22386.1.S1_x_at11/117+9264516..9265010hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28470.1.S1_at--750--6471Chr07:9252243..9252267 (25 bp)
GATACTTGGCCCCAGAACTAATATG
LOC_Os07g15930
OsAffx.28470.1.S1_at--14--2091Chr07:9252302..9252326 (25 bp)
ACATTTGGTGCGTTTCTTCTTGAAA
LOC_Os07g15930
OsAffx.28470.1.S1_at--705--9811Chr07:9252327..9252351 (25 bp)
TAACTTGTGGGCAAAGACCGGTCAA
LOC_Os07g15930
OsAffx.28470.1.S1_at--223--5731Chr07:9252389..9252413 (25 bp)
GACTGGGTTCTTGACCATTTCAAAA
LOC_Os07g15930
OsAffx.28470.1.S1_at--376--2131Chr07:9252464..9252488 (25 bp)
ACAGATGAGGCATGCCGGGTGCTAA
LOC_Os07g15930
OsAffx.28470.1.S1_at--333--3711Chr07:9252491..9252515 (25 bp)
CTAGGACTGCTGTGTTCACACCCAT
LOC_Os07g15930
OsAffx.28470.1.S1_at--778--451Chr07:9252514..9252538 (25 bp)
ATCTGCCAACTTGAGACCGGGCATG
LOC_Os07g15930
OsAffx.28470.1.S1_at--345--4891Chr07:9252603..9252627 (25 bp)
GCTTTAGCACAATGGCTCTAATGCA
LOC_Os07g15930
OsAffx.28470.1.S1_at--304--5311Chr07:9252632..9252656 (25 bp)
GAAGGGTTCGACTCATATCCAATGT
LOC_Os07g15930
OsAffx.28470.1.S1_at--457--2991Chr07:9252652..9252676 (25 bp)
AATGTCATATCCATCGTCTGCAGCA
LOC_Os07g15930
OsAffx.28470.1.S1_at--589--4211Chr07:9252687..9252711 (25 bp)
CCGTATCCTTCCTCTTAGGTGGAAG
LOC_Os07g15930
Target Sequence 
GATACTTGGCCCCAGAACTAATATGGACCGGTAAGGCATCCAAACTAACAGATGTTTTCACATTTGGTGCGTTTCTTCTT
GAAATAACTTGTGGGCAAAGACCGGTCAACGACGATAGTGGACGATACAACCAAGAAATGTTAGTTGACTGGGTTCTTGA
CCATTTCAAAAAAGGCTCTCTTAATGAGACAGTGGACCTGAGGTTGCAAGGTGACTGTAATACAGATGAGGCATGCCGGG
TGCTAAAGCTAGGACTGCTGTGTTCACACCCATCTGCCAACTTGAGACCGGGCATGAGACAAGTCATGCAATACCTTGAT
GGTGACACTCCACTCCCAGACTTAACATCAACAAATATGAGCTTTAGCACAATGGCTCTAATGCAGAATGAAGGGTTCGA
CTCATATCCAATGTCATATCCATCGTCTGCAGCAACCATTGGCACCGTATCCTTCCTCTTAGGTGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis