Browse Element(s) Details


Os.9227.1.S1_a_at

Description gb:AK071615.1
DB_XREF= gi:32981638
TID=Os.9227.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative prohibitin (P0046D03.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105D05, full insert sequence.
FL= gb:AK104133.1 gb:AK071615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1588011/11Mitochondrial prohibitin complex protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15830OsAffx.31892.3.S1_at10/117+9192473..9194816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15830OsAffx.31892.1.S1_x_at4/117+9192473..9194816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15830OsAffx.4864.1.S1_at1/117+9192473..9194816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15840OsAffx.8326.1.S1_x_at1/117+9200654..9203217hypothetical protein
LOC_Os07g15840OsAffx.19950.1.S1_at1/117+9200654..9203217hypothetical protein
LOC_Os07g15850OsAffx.4856.1.S1_x_at1/117+9204802..9210438retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g15860OsAffx.28468.1.S1_at2/117+9213420..9214479hypothetical protein
LOC_Os07g15870OsAffx.16286.1.S1_at11/117+9216446..9217637hypothetical protein
LOC_Os07g15880Os.9227.1.S1_a_at11/117+9219706..9225512Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os07g15880OsAffx.3846.1.S1_at1/117+9219706..9225512Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os07g15890Os.41248.4.S1_x_at1/117+9228610..9233991retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g15900NANA7+9239530..9241129hypothetical protein
LOC_Os07g15910OsAffx.22387.1.S1_at11/117+9244892..9246132hypothetical protein
LOC_Os07g15920OsAffx.28469.1.S1_at11/117+9248139..9248588hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9227.1.S1_a_at--574--3111Chr07:9220556..9220580 (25 bp)
AATATTGCCCTTGATGATGTGTCCA
LOC_Os07g15880
Os.9227.1.S1_a_at--981--5891Chr07:9220236..9220260 (25 bp)
GAGCTGATTGGTCAAGCCATTGCAA
LOC_Os07g15880
Os.9227.1.S1_a_at--553--7651Chr07:9220169..9220193 (25 bp)
GGGAGATCTCTCATACGATGTCATC
LOC_Os07g15880
Os.9227.1.S1_a_at--390--2211Chr07:9220136..9220160 (25 bp)
ACAAGGTGTTCCTGGACTCCAATGA
LOC_Os07g15880
Os.9227.1.S1_a_at--1063--8111Chr07:9220123..9220147 (25 bp)
GGACTCCAATGATCTCTTGCTCAAT
LOC_Os07g15880
Os.9227.1.S1_a_at--1155--1551Chr07:9220091..9220115 (25 bp)
AGCTCACCGTGGCAAACAAGTCGAA
LOC_Os07g15880
Os.9227.1.S1_a_at--1008--2831Chr07:9220060..9220084 (25 bp)
AAGTCATTCTCGCACCATGTTCTAG
LOC_Os07g15880
Os.9227.1.S1_a_at--182--10851Chr07:9219993..9220017 (25 bp)
TTGGTCCTCTCTGTAGTTGCACTAG
LOC_Os07g15880
Os.9227.1.S1_a_at--125--1091Chr07:9219941..9219965 (25 bp)
AGTGACTCAACTTTTGGCAACCGGC
LOC_Os07g15880
Os.9227.1.S1_a_at--628--3391Chr07:9219899..9219923 (25 bp)
CAGCTAAACTTTGCAGGCTACATTT
LOC_Os07g15880
Os.9227.1.S1_a_at--479--171Chr07:9219878..9219902 (25 bp)
ATTTTGACTCTGCTAGTCCTTGAGG
LOC_Os07g15880
Target Sequence 
AATATTGCCCTTGATGATGTGTCCATCACAAGCCTGAGCTTCGGAAAGGAGTTCACTCATGCTATTGAAGCCAAACAGGT
TGCTGCACAAGAAGCTGAGCGTGCTAAGTTCATTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCAC
AGGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCTGCTTTCCTTGCCCTCAGGCAGATCGAA
GCTGCCAGGGAGATCTCTCATACGATGTCATCTTCAGCTAACAAGGTGTTCCTGGACTCCAATGATCTCTTGCTCAATCT
CCAGCAGCTCACCGTGGCAAACAAGTCGAAGNAATGAAGTCATTCTCGCACCATGTTCTAGGTTATTAGCAGATGTCAGT
CTACCAGACAATGTGAGGAACACTTGGTCCTCTCTGTAGTTGCACTAGTGATCATCTGTGATACAGAACTCGACGAGTGA
CTCAACTTTTGGCAACCGGCAATCTTTTTGCAAATTGCAGCTAAACTTTGCAGGCTACATTTTGACTCTGCTAGTCCTTG
AGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9227.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis