Browse Element(s) Details

OsAffx.15575.1.S1_at

Description

tigr:9634.m02296
TID=OsAffx.15575.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g23310	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g23274	Os.49736.1.S1_a_at	11/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.1.S2_at	11/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.2.S1_x_at	11/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.1.S1_at	9/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.1.S1_x_at	9/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23290	Os.5527.1.S1_a_at	11/11	6	+	13600952..13603918	phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os06g23300	OsAffx.15574.1.S1_at	11/11	6	+	13609068..13609642	hypothetical protein
LOC_Os06g23310	OsAffx.15575.1.S1_at	11/11	6	+	13615320..13615867	hypothetical protein
LOC_Os06g23320	OsAffx.20497.1.S1_at	2/11	6	+	13617970..13621420	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320	OsAffx.31287.1.S1_at	1/11	6	+	13617970..13621420	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320	OsAffx.3348.1.S1_at	1/11	6	+	13617970..13621420	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320	OsAffx.22387.1.S1_at	1/11	6	+	13617970..13621420	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23330	NA	NA	6	+	13621967..13622431	hypothetical protein
LOC_Os06g23340	OsAffx.18924.2.S1_x_at	7/11	6	+	13624304..13627908	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340	OsAffx.19421.2.S1_at	2/11	6	+	13624304..13627908	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340	OsAffx.19421.1.S1_at	1/11	6	+	13624304..13627908	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340	OsAffx.18924.1.S1_at	1/11	6	+	13624304..13627908	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23350	Os.55197.1.S1_at	11/11	6	+	13629102..13630409	Seed maturation protein, expressed
LOC_Os06g23360	Os.54783.1.S1_at	11/11	6	+	13630843..13631939	expressed protein
LOC_Os06g23370	Os.49732.1.S1_at	11/11	6	+	13634938..13639034	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15575.1.S1_at--1110--93	2	Chr06:13615382..13615406 (25 bp)	AGGAATGGATATTGCGACCAATGGA	LOC_Os06g23310
OsAffx.15575.1.S1_at--1029--1067	1	Chr06:13615393..13615417 (25 bp)	TTGCGACCAATGGAGGTGAAAGCAT	LOC_Os06g23310
OsAffx.15575.1.S1_at--356--897	1	Chr06:13615409..13615433 (25 bp)	TGAAAGCATTCTACAGTCCACCGTG	LOC_Os06g23310
OsAffx.15575.1.S1_at--945--11	1	Chr06:13615416..13615436 (21 bp)	ATTCTACAGTCCACCGTGAGCCTCG	LOC_Os06g23310
OsAffx.15575.1.S1_at--593--587	1	Chr06:13615661..13615681 (21 bp)	GAGCCTCGCCGCTGATAGTGTTGCA	LOC_Os06g23310
OsAffx.15575.1.S1_at--877--933	1	Chr06:13615662..13615686 (25 bp)	TCGCCGCTGATAGTGTTGCAGATGA	LOC_Os06g23310
OsAffx.15575.1.S1_at--672--741	1	Chr06:13615674..13615698 (25 bp)	GTGTTGCAGATGAAGCGCTTGATTT	LOC_Os06g23310
OsAffx.15575.1.S1_at--198--541	1	Chr06:13615685..13615709 (25 bp)	GAAGCGCTTGATTTCAGGTTTCAAT	LOC_Os06g23310
OsAffx.15575.1.S1_at--557--101	1	Chr06:13615700..13615724 (25 bp)	AGGTTTCAATTCCTTGTCGTCGATT	LOC_Os06g23310
OsAffx.15575.1.S1_at--440--1065	1	Chr06:13615709..13615733 (25 bp)	TTCCTTGTCGTCGATTGGTACGGGA	LOC_Os06g23310
OsAffx.15575.1.S1_at--1157--803	1	Chr06:13615797..13615821 (25 bp)	GGAGAGGAGGATCATCACCCACCGA	LOC_Os06g23310

Target Sequence

AGGAATGGATATTGCGACCAATGGAGGTGAAAGCATTCTACAGTCCACCGTGAGCCTCGCCGCTGATAGTGTTGCAGATG
AAGCGCTTGATTTCAGGTTTCAATTCCTTGTCGTCGATTGGTACGGGAGGGGAGGGGGGCGTGTGCTGGTGGCGTGGGCA
GTGGTGAGGCCGTTTGTGAAGCGGAGGAAGAGGAGAGGAGGATCATCACCCACCGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis