Browse Element(s) Details

Os.5527.1.S1_a_at

Description

gb:AK100224.1
DB_XREF= gi:32985433
TID=Os.5527.1
CNT=42
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.5527 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023047L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047L02, full insert sequence.
FL= gb:AK100224.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g23290	11/11	phosphatidylinositol 3- and 4-kinase family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g23260	Os.27037.1.A1_at	1/11	6	+	13573284..13582437	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23274	Os.49736.1.S1_a_at	11/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.1.S2_at	11/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.2.S1_x_at	11/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.1.S1_at	9/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.1.S1_x_at	9/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23290	Os.5527.1.S1_a_at	11/11	6	+	13600952..13603918	phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os06g23300	OsAffx.15574.1.S1_at	11/11	6	+	13609068..13609642	hypothetical protein
LOC_Os06g23310	OsAffx.15575.1.S1_at	11/11	6	+	13615320..13615867	hypothetical protein
LOC_Os06g23320	OsAffx.20497.1.S1_at	2/11	6	+	13617970..13621420	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320	OsAffx.31287.1.S1_at	1/11	6	+	13617970..13621420	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320	OsAffx.3348.1.S1_at	1/11	6	+	13617970..13621420	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320	OsAffx.22387.1.S1_at	1/11	6	+	13617970..13621420	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23330	NA	NA	6	+	13621967..13622431	hypothetical protein
LOC_Os06g23340	OsAffx.18924.2.S1_x_at	7/11	6	+	13624304..13627908	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340	OsAffx.19421.2.S1_at	2/11	6	+	13624304..13627908	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340	OsAffx.19421.1.S1_at	1/11	6	+	13624304..13627908	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340	OsAffx.18924.1.S1_at	1/11	6	+	13624304..13627908	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006512	biological_process	ubiquitin cycle
GO:0004428	molecular_function	inositol or phosphatidylinositol kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5527.1.S1_a_at--229--435	1	Chr06:13601545..13601569 (25 bp)	CCAGGCTCGTGAACCATTCAGTGAT	LOC_Os06g23290
Os.5527.1.S1_a_at--28--497	1	Chr06:13601511..13601535 (25 bp)	GCATACATCAAATCACTAGACGCTG	LOC_Os06g23290
Os.5527.1.S1_a_at--558--269	1	Chr06:13601475..13601499 (25 bp)	AAGCTTCTCAAGTTCCATGGGTGGG	LOC_Os06g23290
Os.5527.1.S1_a_at--114--1069	1	Chr06:13601463..13601487 (25 bp)	TTCCATGGGTGGGAGCTGTCTGCAA	LOC_Os06g23290
Os.5527.1.S1_a_at--373--89	1	Chr06:13601383..13601407 (25 bp)	AGGCCTCACACCGTATGACATCGGG	LOC_Os06g23290
Os.5527.1.S1_a_at--1005--209	1	Chr06:13601366..13601390 (25 bp)	ACATCGGGCGTATACTGTGCAGGGA	LOC_Os06g23290
Os.5527.1.S1_a_at--1060--27	1	Chr06:13601235..13601259 (25 bp)	ATAGACCGTCACCTCGACAAGAAGT	LOC_Os06g23290
Os.5527.1.S1_a_at--982--141	1	Chr06:13601216..13601240 (25 bp)	AGAAGTTCGCTTAGAAACCCAGAAT	LOC_Os06g23290
Os.5527.1.S1_a_at--1081--641	1	Chr06:13601187..13601211 (25 bp)	GATCTAGTTGTTCAGCTGTATCCAG	LOC_Os06g23290
Os.5527.1.S1_a_at--709--339	1	Chr06:13601175..13601199 (25 bp)	CAGCTGTATCCAGTCAGTTTGGTGT	LOC_Os06g23290
Os.5527.1.S1_a_at--917--561	1	Chr06:13601141..13601165 (25 bp)	GACAAGCCACTCTTCAATGGACTAA	LOC_Os06g23290

Target Sequence

CCAGGCTCGTGAACCATTCAGTGATGAAACCATTGCATACATCAAATCACTAGACGCTGAAGAGGACATCAAGCTTCTCA
AGTTCCATGGGTGGGAGCTGTCTGCAAGATGTGCTCGTGTCCTGNGCATCAGCACCATGCTTTTAAAGAAAGGTGCAGCA
CGAGGCCTCACACCGTATGACATCGGGCGTATACTGTGCAGGGAAACTGTGAATAGAGACTCTGAGATTGAGGACATCGT
CCAGGAAGCCGAGGGCCATGTTCTCCCAGGGTCAAGTGAAGTAATCTTCTTAGAAACCGTATCTGAAATCATAGACCGTC
ACCTCGACAAGAAGTTCGCTTAGAAACCCAGAATAACTGATCTAGTTGTTCAGCTGTATCCAGTCAGTTTGGTGTAAGTA
TGTTGACAAGCCACTCTTCAATGGACTAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis