Browse Element(s) Details

Os.49736.1.S2_at

Description

gb:AK121342.1
DB_XREF= gi:37990965
TID=Os.49736.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121A11, full insert sequence.
FL= gb:AK069001.1 gb:AK121342.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g23274	11/11	Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g05960	1/11	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g25210	1/11	retrotransposon protein, putative, Ty3-gypsy subclass, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g23230	Os.14919.1.S1_at	7/11	6	+	13558545..13565502	transposon protein, putative, Mutator sub-class
LOC_Os06g23230	Os.56216.1.S1_at	2/11	6	+	13558545..13565502	transposon protein, putative, Mutator sub-class
LOC_Os06g23230	OsAffx.29313.1.S1_at	1/11	6	+	13558545..13565502	transposon protein, putative, Mutator sub-class
LOC_Os06g23230	OsAffx.27770.1.S1_x_at	1/11	6	+	13558545..13565502	transposon protein, putative, Mutator sub-class
LOC_Os06g23240	OsAffx.30226.5.S1_at	11/11	6	+	13567066..13568661	hypothetical protein
LOC_Os06g23240	OsAffx.30226.2.S1_s_at	3/11	6	+	13567066..13568661	hypothetical protein
LOC_Os06g23240	OsAffx.442.1.S1_x_at	3/11	6	+	13567066..13568661	hypothetical protein
LOC_Os06g23240	OsAffx.442.1.S1_at	2/11	6	+	13567066..13568661	hypothetical protein
LOC_Os06g23240	OsAffx.30226.2.S1_x_at	1/11	6	+	13567066..13568661	hypothetical protein
LOC_Os06g23250	NA	NA	6	+	13571724..13572685	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23260	Os.27037.1.A1_at	1/11	6	+	13573284..13582437	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23274	Os.49736.1.S1_a_at	11/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.1.S2_at	11/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.2.S1_x_at	11/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.1.S1_at	9/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.1.S1_x_at	9/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23290	Os.5527.1.S1_a_at	11/11	6	+	13600952..13603918	phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os06g23300	OsAffx.15574.1.S1_at	11/11	6	+	13609068..13609642	hypothetical protein
LOC_Os06g23310	OsAffx.15575.1.S1_at	11/11	6	+	13615320..13615867	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0005515	molecular_function	protein binding
GO:0008270	molecular_function	zinc ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49736.1.S2_at--396--839	1	Chr06:13584160..13584184 (25 bp)	GGCGAAGATTCGTCTTCATCACGGC	LOC_Os06g23274
Os.49736.1.S2_at--1--99	1	Chr06:13584115..13584139 (25 bp)	AGGAGAGCAGCTAGAGCTCTCTCCC	LOC_Os06g23274
Os.49736.1.S2_at--35--931	1	Chr06:13584094..13584118 (25 bp)	TCCCTCGGTTCTCTTGGCATAGGAA	LOC_Os06g23274
Os.49736.1.S2_at--1062--999	1	Chr06:13584034..13584058 (25 bp)	TAGAGAGCAAGGTTTGGCGTTTTGA	LOC_Os06g23274
Os.49736.1.S2_at--855--611	1	Chr06:13584011..13584035 (25 bp)	GAGGGCGTGGACACGTCGCTCCCAC	LOC_Os06g23274
Os.49736.1.S2_at--1030--949	1	Chr06:13583957..13583981 (25 bp)	TCTCCTGTCTCTCTGGTCTGTTGGT	LOC_Os06g23274
Os.49736.1.S2_at--382--377	1	Chr06:13583949..13583973 (25 bp)	CTCTCTGGTCTGTTGGTCGGGTAGA	LOC_Os06g23274
Os.49736.1.S2_at--160--703	1	Chr06:13583829..13583853 (25 bp)	GTACAAACGTGGGTGAGATTGGTTT	LOC_Os06g23274
Os.49736.1.S2_at--425--605	1	Chr06:13583815..13583839 (25 bp)	GAGATTGGTTTTTGGATGAATTTCC	LOC_Os06g23274
Os.49736.1.S2_at--265--1037	5	Chr04:3073574..3073614 (25 bp)	TTTTTTCCTAACTTTGTAGCTTCAT	LOC_Os04g05960
Os.49736.1.S2_at--263--491	1	Chr06:13583765..13583789 (25 bp)	GCTTCATAACTTAATGTGTGGACGA	LOC_Os06g23274

Target Sequence

GGCGAAGATTCGTCTTCATCACGGCNGNCGGTGAGATCGAAGGCGAGGAGAGCAGCTAGAGCTCTCTCCCTCGGTTCTCT
TGGCATAGGAATGGNGAGTGAGGTGTGGCGATGTGACTGGGAAAGATAGAGAGCAAGGTTTGGCGTTTTGAGGGCGTGGA
CACGTCGCTCCCACGCGTCGACGCGCCCAGCTCTCGGTCTCTCTCTCCTGTCTCTCTGGTCTGTTGGTCGGGTAGAGCGG
TGGAGGAGGAGATGGACAGGGCGTGGGCAAGCCAGGGAGGCTGCCAGGTGGGCCCAGGTCGTGGCAAACTAGGTGGAAGA
GAGAGGTGTGGGTACAAACGTGGGTGAGATTGGTTTTTGGATGAATTTCCGGAATTATTTTTTCCTAACTTTGTAGCTTC
ATAACTTAATGTGTGGACGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis