Browse Element(s) Details

OsAffx.30226.5.S1_at

Description

tigr:9634.m02288
TID=OsAffx.30226.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g23240	11/11	hypothetical protein
LOC_Os08g08640	1/11	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13960	1/11	retrotransposon protein, putative, unclassified
LOC_Os08g08370	1/11	transposon protein, putative, CACTA, En/Spm sub-class

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g23190	OsAffx.4912.1.S1_at	9/11	6	+	13540655..13543835	Leucine Rich Repeat family protein, expressed
LOC_Os06g23200	NA	NA	6	+	13548049..13550508	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23210	Os.7041.1.S1_at	1/11	6	+	13553711..13554286	ribosomal protein L30 containing protein, expressed
LOC_Os06g23220	NA	NA	6	+	13556095..13558145	GRF zinc finger family protein
LOC_Os06g23230	Os.14919.1.S1_at	7/11	6	+	13558545..13565502	transposon protein, putative, Mutator sub-class
LOC_Os06g23230	Os.56216.1.S1_at	2/11	6	+	13558545..13565502	transposon protein, putative, Mutator sub-class
LOC_Os06g23230	OsAffx.29313.1.S1_at	1/11	6	+	13558545..13565502	transposon protein, putative, Mutator sub-class
LOC_Os06g23230	OsAffx.27770.1.S1_x_at	1/11	6	+	13558545..13565502	transposon protein, putative, Mutator sub-class
LOC_Os06g23240	OsAffx.30226.5.S1_at	11/11	6	+	13567066..13568661	hypothetical protein
LOC_Os06g23240	OsAffx.30226.2.S1_s_at	3/11	6	+	13567066..13568661	hypothetical protein
LOC_Os06g23240	OsAffx.442.1.S1_x_at	3/11	6	+	13567066..13568661	hypothetical protein
LOC_Os06g23240	OsAffx.442.1.S1_at	2/11	6	+	13567066..13568661	hypothetical protein
LOC_Os06g23240	OsAffx.30226.2.S1_x_at	1/11	6	+	13567066..13568661	hypothetical protein
LOC_Os06g23250	NA	NA	6	+	13571724..13572685	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23260	Os.27037.1.A1_at	1/11	6	+	13573284..13582437	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23274	Os.49736.1.S1_a_at	11/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.1.S2_at	11/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.2.S1_x_at	11/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.1.S1_at	9/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274	Os.49736.1.S1_x_at	9/11	6	+	13583736..13590993	Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.30226.5.S1_at--19--279	1	Chr06:13568137..13568161 (25 bp)	AAGATGCGGGCTGTTTTGACGCAAT	LOC_Os06g23240
OsAffx.30226.5.S1_at--228--473	1	Chr06:13568146..13568170 (25 bp)	GCTGTTTTGACGCAATCTTCGGATC	LOC_Os06g23240
OsAffx.30226.5.S1_at--147--705	1	Chr06:13568234..13568258 (25 bp)	GTAAAGATCGTAAGACTCTGTCACT	LOC_Os06g23240
OsAffx.30226.5.S1_at--626--571	1	Chr06:13568247..13568271 (25 bp)	GACTCTGTCACTGATCCAACTTCAT	LOC_Os06g23240
OsAffx.30226.5.S1_at--440--535	1	Chr06:13568388..13568412 (25 bp)	GAAGTTGTTCACAGACAAGTTACAA	LOC_Os06g23240
OsAffx.30226.5.S1_at--526--959	1	Chr06:13568536..13568560 (25 bp)	TCATATGCAAATTTCTGTGATACCA	LOC_Os06g23240
OsAffx.30226.5.S1_at--127--741	1	Chr06:13568552..13568576 (25 bp)	GTGATACCATACTATTAAGCTGTGA	LOC_Os06g23240
OsAffx.30226.5.S1_at--201--629	4	Chr08:4819442..4819463 (22 bp)	GATGAACTAACCCTTGCGGAAGCTG	LOC_Os08g08370
OsAffx.30226.5.S1_at--432--913	1	Chr06:13568589..13568613 (25 bp)	TGCGGAAGCTGTTCTCTACCATTTA	LOC_Os06g23240
OsAffx.30226.5.S1_at--747--161	1	Chr06:13568595..13568619 (25 bp)	AGCTGTTCTCTACCATTTATCTTGT	LOC_Os06g23240
OsAffx.30226.5.S1_at--1092--171	2	Chr06:13568606..13568630 (25 bp)	ACCATTTATCTTGTAGGAGTTGTAC	LOC_Os06g23240

Target Sequence

AAGATGCGGGCTGTTTTGACGCAATCTTCGGATCTTGATAAGGCGCTGGAAAGCTTGGGGAAGAGGAAGAAGGATGAATG
GACCACTGAGGAGAAGCGTAAAGATCGTAAGACTCTGTCACTGATCCAACTTCATCTATCTAATGATATTTTGCAAGAAG
TGTTGCAGGAAAAAACTGCTGCAGAACTTTGGCTCAAATTGGAATCGATCTGCATGTCTAAAAATCTAACCAGCAAGATG
CATATGAAGATGAAGTTGTTCACAGACAAGTTACAAGAGAGTGGTTTTGTGTTGAACCACATATCGGTCTTCAAGGAGAT
CGCTGCCGACCTAGTGTCGATAGAGGTACAGTTTGATGATGAAGATTTAGGTCTTCTACTGTTATGCTCAATGCCTAGTT
CATATGCAAATTTCTGTGATACCATACTATTAAGCTGTGATGAACTAACCCTTGCGGAAGCTGTTCTCTACCATTTATCT
TGTAGGAGTTGTAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis