Browse Element(s) Details


OsAffx.4912.1.S1_at

Description tigr:9634.m02283
TID=OsAffx.4912.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g231909/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23160Os.17321.1.S1_at11/116+13513671..13520720Nucleotidyl transferase family protein, expressed
LOC_Os06g23160OsAffx.17544.1.S1_at1/116+13513671..13520720Nucleotidyl transferase family protein, expressed
LOC_Os06g23170OsAffx.23712.1.S1_at2/116+13523541..13531870retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23170OsAffx.242.1.S1_at1/116+13523541..13531870retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23180OsAffx.27783.1.S1_at10/116+13537871..13539417hypothetical protein
LOC_Os06g23180OsAffx.24637.2.S1_x_at1/116+13537871..13539417hypothetical protein
LOC_Os06g23190OsAffx.4912.1.S1_at9/116+13540655..13543835Leucine Rich Repeat family protein, expressed
LOC_Os06g23200NANA6+13548049..13550508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23210Os.7041.1.S1_at1/116+13553711..13554286ribosomal protein L30 containing protein, expressed
LOC_Os06g23220NANA6+13556095..13558145GRF zinc finger family protein
LOC_Os06g23230Os.14919.1.S1_at7/116+13558545..13565502transposon protein, putative, Mutator sub-class
LOC_Os06g23230Os.56216.1.S1_at2/116+13558545..13565502transposon protein, putative, Mutator sub-class
LOC_Os06g23230OsAffx.29313.1.S1_at1/116+13558545..13565502transposon protein, putative, Mutator sub-class
LOC_Os06g23230OsAffx.27770.1.S1_x_at1/116+13558545..13565502transposon protein, putative, Mutator sub-class
LOC_Os06g23240OsAffx.30226.5.S1_at11/116+13567066..13568661hypothetical protein
LOC_Os06g23240OsAffx.30226.2.S1_s_at3/116+13567066..13568661hypothetical protein
LOC_Os06g23240OsAffx.442.1.S1_x_at3/116+13567066..13568661hypothetical protein
LOC_Os06g23240OsAffx.442.1.S1_at2/116+13567066..13568661hypothetical protein
LOC_Os06g23240OsAffx.30226.2.S1_x_at1/116+13567066..13568661hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4912.1.S1_at--704--10251Chr06:13543045..13543069 (25 bp)
TTTGATCCACAAAGGCAGGCAGGGT
LOC_Os06g23190
OsAffx.4912.1.S1_at--108--7771Chr06:13543084..13543108 (25 bp)
GGTGAACGCCGATATGATACTTAGC
LOC_Os06g23190
OsAffx.4912.1.S1_at--978--6491Chr06:13543094..13543118 (25 bp)
GATATGATACTTAGCATCGCCATTG
LOC_Os06g23190
OsAffx.4912.1.S1_at--1087--6671Chr06:13543121..13543145 (25 bp)
GTTGCGAGTGCACTAGATTACCTAC
LOC_Os06g23190
OsAffx.4912.1.S1_at--411--5672Chr06:13543211..13543235 (25 bp)
GACATGACAGCTAAGGTTGGAGACT
LOC_Os06g23190
OsAffx.4912.1.S1_at--1008--1711NONE
ACCATCAGCAAAGGCCGATGTCTAC
NONE
OsAffx.4912.1.S1_at--608--4851NONE
GCTACGGGAATGTTGCTCCTCGAGA
NONE
OsAffx.4912.1.S1_at--921--2331Chr06:13543517..13543541 (25 bp)
AAAGAGGCCTGTTGATCCGCAGTTT
LOC_Os06g23190
OsAffx.4912.1.S1_at--542--8631Chr06:13543566..13543590 (25 bp)
TGGGTGCGAGATGGATTCCCGCATC
LOC_Os06g23190
OsAffx.4912.1.S1_at--368--10651Chr06:13543581..13543605 (25 bp)
TTCCCGCATCGAGCTCATGAAGTAG
LOC_Os06g23190
OsAffx.4912.1.S1_at--69--3511Chr06:13543596..13543620 (25 bp)
CATGAAGTAGTTGACGAGCGCCTTA
LOC_Os06g23190
Target Sequence 
TTTGATCCACAAAGGCAGGCAGGGTGAGAATGTTGCAGGGGTGAACGCCGATATGATACTTAGCATCGCCATTGATGTTG
CGAGTGCACTAGATTACCTACACAATGATTGTGGAGAACAAGTGGTGCACTGTGATATCAAACCGAGCAATGTGCTTCTC
GATGAAGACATGACAGCTAAGGTTGGAGACTTTGGAATATGGGTATGGGGAGTAAACCATCAGCAAAGGCCGATGTCTAC
AGCTACGGGAATGTTGCTCCTCGAGATGATCACTGGAAAGAGGCCTGTTGATCCGCAGTTTGGAGGGGACATGAATCTTG
AGAAATGGGTGCGAGATGGATTCCCGCATCGAGCTCATGAAGTAGTTGACGAGCGCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis