Browse Element(s) Details


OsAffx.24637.2.S1_x_at

Description gb:NM_187909.1
DB_XREF= gi:34902901
TID=OsAffx.24637.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g279801/11hypothetical protein
LOC_Os06g111201/11hypothetical protein
LOC_Os06g231801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27950Os.11054.1.S1_at10/117+16301327..16305865Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g27960OsAffx.28635.1.S1_at11/117+16307259..16307887expressed protein
LOC_Os07g27970OsAffx.28637.1.S1_x_at11/117+16313393..16317142O-methyltransferase family protein, expressed
LOC_Os07g27980OsAffx.16446.1.S1_at11/117+16323164..16325862hypothetical protein
LOC_Os07g27980OsAffx.24637.2.S1_x_at1/117+16323164..16325862hypothetical protein
LOC_Os07g28000OsAffx.20497.1.S1_at2/117+16331281..16334644transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28010NANA7+16335345..16335687hypothetical protein
LOC_Os07g28020OsAffx.19421.2.S1_at2/117+16337370..16339695transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28030OsAffx.18924.4.S1_at6/117+16341916..16344165transposon protein, putative, unclassified
LOC_Os07g28030OsAffx.18924.2.S1_x_at5/117+16341916..16344165transposon protein, putative, unclassified
LOC_Os07g28030OsAffx.22896.1.S1_x_at1/117+16341916..16344165transposon protein, putative, unclassified
LOC_Os07g28040OsAffx.28637.1.S1_x_at11/117+16345121..16347785O-methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24637.2.S1_x_at--1018--5891Chr01:8526441..8526463 (23 bp)
GAGCTGAATGACTACGCGACAGCCC
NONE
OsAffx.24637.2.S1_x_at--198--1591Chr01:8526441..8526462 (22 bp)
AGCTGAATGACTACGCGACAGCCCT
NONE
OsAffx.24637.2.S1_x_at--371--4751Chr01:8526441..8526461 (21 bp)
GCTGAATGACTACGCGACAGCCCTC
NONE
OsAffx.24637.2.S1_x_at--289--2991Chr01:8525984..8526457 (25 bp)
AATGACTACGCGACAGCCCTCGTCT
NONE
OsAffx.24637.2.S1_x_at--267--991Chr01:8526280..8526304 (25 bp)
AGGATGACGGGCTCCACGCGGACCA
NONE
OsAffx.24637.2.S1_x_at--744--9391Chr01:8526235..8526259 (25 bp)
TCGTCGGCTACGATGGCGAGTACCA
NONE
OsAffx.24637.2.S1_x_at--766--571Chr01:8526205..8526229 (25 bp)
AGCACCCGGTCCACGGCATCTCAAC
NONE
OsAffx.24637.2.S1_x_at--467--3751Chr01:8526007..8526031 (25 bp)
CTCACTTCGCCTTGAGCAGCGCGAG
NONE
OsAffx.24637.2.S1_x_at--22--3333Chr02:10879639..10879659 (21 bp)
CACTTCGCCTTGAGCAGCGCGAGCT
NONE
OsAffx.24637.2.S1_x_at--133--3651Chr01:8525866..8525890 (25 bp)
CTTCGCCGCTGTGCGCGTGTGAGAC
NONE
OsAffx.24637.2.S1_x_at--1056--8695Chr06:13538657..13538680 (24 bp)
TGTGCGCGTGTGAGACAGAGAGTGA
LOC_Os06g23180
Target Sequence 
GAGCTGAATGACTACGCGACAGCCCTCGTCTCCTACTCGGGCCACGCCATTGCCACCTCCTCCTCGGGCCTCCCCCGCGC
GGCGGATGAGGAGGATGACGGGCTCCACGCGGACCACGCGAGGAGGTCCCGCCGCATCGTCGGCTACGATGGCGAGTACC
ACCGCCAGCACCCGGTCCACGGCATCTCAACCCCGCCGCCCGCGCGCCGTGGCCATCTCCTCTCGAGCCCCGCCCACGCC
GCGCGCCTCGTCCGTCGCCCCGGCCAACCGCCTTGCCGCCACTGCTGCCTCGCCTCCTCCGTCGCCGCGCTCGCCTCCTC
TGCCGCCGCGCTCGCCTCCTCCGCCGCACCCCCGCCGGCACCACCTCACTTCGCCTTGAGCAGCGCGAGCTCCCGCCGCC
GCCGCCTCGTCTCGCCTCCTCCGCCGCAGCCTCGCCTCGCCTCCACCGCCGCAGCCTCGCCTCGCCTCGCCTCCTCCGCC
GCACCCCGCCGCCGCTCGCCACCTCCTTCGCCGCTGTGCGCGTGTGAGACAGAGAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24637.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis