Browse Element(s) Details


Os.11054.1.S1_at

Description gb:AK067630.1
DB_XREF= gi:32977648
TID=Os.11054.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11054 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013113E15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013113E15, full insert sequence.
FL= gb:AK067630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2795010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27900NANA7+16276843..16279693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g27910NANA7+16281032..16281547retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g27920OsAffx.28634.1.S1_at11/117+16282620..16282928hypothetical protein
LOC_Os07g27930Os.5304.1.S1_at9/117+16288275..16291748DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed
LOC_Os07g27940NANA7+16293116..16293668Protease inhibitor/seed storage/LTP family protein
LOC_Os07g27950Os.11054.1.S1_at10/117+16301327..16305865Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g27960OsAffx.28635.1.S1_at11/117+16307259..16307887expressed protein
LOC_Os07g27970OsAffx.28637.1.S1_x_at11/117+16313393..16317142O-methyltransferase family protein, expressed
LOC_Os07g27980OsAffx.16446.1.S1_at11/117+16323164..16325862hypothetical protein
LOC_Os07g27980OsAffx.24637.2.S1_x_at1/117+16323164..16325862hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11054.1.S1_at--346--10431Chr07:16305398..16305422 (25 bp)
TTAGCTATGGGTTCCTTCAGGTGTA
LOC_Os07g27950
Os.11054.1.S1_at--400--6331Chr07:16305439..16305463 (25 bp)
GATGCACAGCTGGTTGATCAGTATT
LOC_Os07g27950
Os.11054.1.S1_at--918--731Chr07:16305478..16305502 (25 bp)
ATGTTTTAGCAGTTTCTTGATGCCG
LOC_Os07g27950
Os.11054.1.S1_at--533--1171Chr07:16305529..16305553 (25 bp)
AGTCAATTGTGTCGCAGATTCTCAT
LOC_Os07g27950
Os.11054.1.S1_at--119--6171Chr07:16305581..16305605 (25 bp)
GAGGATTCTCATGTACGTTGTGTTA
LOC_Os07g27950
Os.11054.1.S1_at--156--8551Chr07:16305668..16305692 (25 bp)
TGGAGCTTTGTTAACAGCACATGCT
LOC_Os07g27950
Os.11054.1.S1_at--1024--1491Chr07:16305683..16305707 (25 bp)
AGCACATGCTGTCTCCTTAATATGC
LOC_Os07g27950
Os.11054.1.S1_at--209--8731NONE
TGTCTGCATCCTGTTGAAGCCAATT
NONE
Os.11054.1.S1_at--494--171Chr07:16305770..16305794 (25 bp)
ATTTTGCACTTTGTTCGATGATGTT
LOC_Os07g27950
Os.11054.1.S1_at--547--1191Chr07:16305824..16305849 (25 bp)
AGTATGACGGTAAGCACGCAGCCTT
LOC_Os07g27950
Os.11054.1.S1_at--307--9791Chr07:16305795..16305859 (25 bp)
TAAGCACGCAGCCTTAATCTTTCAC
LOC_Os07g27950
Target Sequence 
TTAGCTATGGGTTCCTTCAGGTGTAAGTATGGGGTATAGGTGATGCACAGCTGGTTGATCAGTATTCGCTCCTGAATGAA
ATGTTTTAGCAGTTTCTTGATGCCGGTAGAGATGTACATTCCTTCTCTCTAAGTCAATTGTGTCGCAGATTCTCATTTTA
GCCNTTGTAGGAAGTATTTGNATTGAGGATTCTCATGTACGTTGTGTTAGCAAGTGTTGAATAAATACATGGAAATGCAG
AGGTTTGTAAGAAGAAAAATGGTTGTGGAATTGGAGCTTTGTTAACAGCACATGCTGTCTCCTTAATATGCAGTAGACGN
ACATTCTACCCCTTTGGNTGCTTGATACCCTTGTCTGCATCCTGTTGAAGCCAATTTTGCACTTTGTTCGATGATGTTTA
AGCGACACGCTGGAAATTAGAAAGGCAGAGTATGACGGTAAGCACGCAGCCTTAATCTTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis