Browse Element(s) Details


Os.7041.1.S1_at

Description gb:AK063315.1
DB_XREF= gi:32973333
TID=Os.7041.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7041 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-G07, full insert sequence.
FL= gb:AK063315.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g232101/11ribosomal protein L30 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23170OsAffx.23712.1.S1_at2/116+13523541..13531870retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23170OsAffx.242.1.S1_at1/116+13523541..13531870retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23180OsAffx.27783.1.S1_at10/116+13537871..13539417hypothetical protein
LOC_Os06g23180OsAffx.24637.2.S1_x_at1/116+13537871..13539417hypothetical protein
LOC_Os06g23190OsAffx.4912.1.S1_at9/116+13540655..13543835Leucine Rich Repeat family protein, expressed
LOC_Os06g23200NANA6+13548049..13550508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23210Os.7041.1.S1_at1/116+13553711..13554286ribosomal protein L30 containing protein, expressed
LOC_Os06g23220NANA6+13556095..13558145GRF zinc finger family protein
LOC_Os06g23230Os.14919.1.S1_at7/116+13558545..13565502transposon protein, putative, Mutator sub-class
LOC_Os06g23230Os.56216.1.S1_at2/116+13558545..13565502transposon protein, putative, Mutator sub-class
LOC_Os06g23230OsAffx.29313.1.S1_at1/116+13558545..13565502transposon protein, putative, Mutator sub-class
LOC_Os06g23230OsAffx.27770.1.S1_x_at1/116+13558545..13565502transposon protein, putative, Mutator sub-class
LOC_Os06g23240OsAffx.30226.5.S1_at11/116+13567066..13568661hypothetical protein
LOC_Os06g23240OsAffx.30226.2.S1_s_at3/116+13567066..13568661hypothetical protein
LOC_Os06g23240OsAffx.442.1.S1_x_at3/116+13567066..13568661hypothetical protein
LOC_Os06g23240OsAffx.442.1.S1_at2/116+13567066..13568661hypothetical protein
LOC_Os06g23240OsAffx.30226.2.S1_x_at1/116+13567066..13568661hypothetical protein
LOC_Os06g23250NANA6+13571724..13572685transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23260Os.27037.1.A1_at1/116+13573284..13582437transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007046biological_processribosome biogenesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7041.1.S1_at--295--5992Chr08:523338..523362 (25 bp)
GAGACCCAGGAGATGTACGCCGCGC
NONE
Os.7041.1.S1_at--600--2031NONE
ACTAGACTCACCAGTGGGCACCAGA
NONE
Os.7041.1.S1_at--1041--5731Chr08:525188..525212 (25 bp)
GACTGGCTACTATATGCTTGAGACT
NONE
Os.7041.1.S1_at--441--1411Chr08:525208..525232 (25 bp)
AGACTATCTTTGCTCTCAATGATGA
NONE
Os.7041.1.S1_at--576--5431Chr08:525240..525264 (25 bp)
GAACCTGTTCTGGTAACTCATTATT
NONE
Os.7041.1.S1_at--51--7511Chr08:525272..525296 (25 bp)
GTGGTCTCATCAAGCTTGTACCTTT
NONE
Os.7041.1.S1_at--1140--1491Chr08:525284..525308 (25 bp)
AGCTTGTACCTTTGAAGACCGTAAT
NONE
Os.7041.1.S1_at--331--5831Chr08:525300..525324 (25 bp)
GACCGTAATGTCTTGGCCTTTGTAG
NONE
Os.7041.1.S1_at--1109--7131Chr08:525309..525333 (25 bp)
GTCTTGGCCTTTGTAGTCAGTTAAA
NONE
Os.7041.1.S1_at--692--10472Chr08:525382..525406 (25 bp)
TTACTGCTTCCTCTATCATCGAAAT
NONE
Os.7041.1.S1_at--460--7871Chr08:525436..525460 (25 bp)
GGTTTATCACTTCATTTCAACTAGG
NONE
Target Sequence 
GAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCA
CCGCCCGCCCGCCGCTGCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCCATTC
TTCAATNAAGACTGGCTACTATATGCTTGAGACTATCTTTGCTCTCAATGATGATTTCATTGAACCTGTTCTGGTAACTC
ATTATTTACCAAAGTGGTCTCATCAAGCTTGTACCTTTGAAGACCGTAATGTCTTGGCCTTTGTAGTCAGTTAAATGAAT
AAAGCCTTTTTGATATGTTGGTGCCACTGNTCCAATCTTGNTCAGTTACTGCTTCCTCTATCATCGAAATTATTGCTGCA
AAATTCACATTCCATTTATGGTTTATCACTTCATTTCAACTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis