Browse Element(s) Details


Os.17321.1.S1_at

Description gb:AK100837.1
DB_XREF= gi:32986046
TID=Os.17321.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17321 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123E15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123E15, full insert sequence.
FL= gb:AK100837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2316011/11Nucleotidyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23130OsAffx.15573.1.S1_at5/116+13487228..13489948hypothetical protein
LOC_Os06g23140OsAffx.27781.1.S1_at11/116+13497673..13500215Copper amine oxidase, enzyme domain containing protein
LOC_Os06g23150OsAffx.27782.1.S1_at11/116+13509345..13509756hypothetical protein
LOC_Os06g23160Os.17321.1.S1_at11/116+13513671..13520720Nucleotidyl transferase family protein, expressed
LOC_Os06g23160OsAffx.17544.1.S1_at1/116+13513671..13520720Nucleotidyl transferase family protein, expressed
LOC_Os06g23170OsAffx.23712.1.S1_at2/116+13523541..13531870retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23170OsAffx.242.1.S1_at1/116+13523541..13531870retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23180OsAffx.27783.1.S1_at10/116+13537871..13539417hypothetical protein
LOC_Os06g23180OsAffx.24637.2.S1_x_at1/116+13537871..13539417hypothetical protein
LOC_Os06g23190OsAffx.4912.1.S1_at9/116+13540655..13543835Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006446biological_processregulation of translational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17321.1.S1_at--947--3871Chr06:13514757..13514781 (25 bp)
CTGTTATTGGCCGTCATTGTCGAAT
LOC_Os06g23160
Os.17321.1.S1_at--1127--7071Chr06:13514479..13514503 (25 bp)
GTCAATTCTGTCGTGATGAACCATG
LOC_Os06g23160
Os.17321.1.S1_at--921--7331Chr06:13514404..13514428 (25 bp)
GTGCAACTTCAAGAACGTGCTGTTT
LOC_Os06g23160
Os.17321.1.S1_at--736--2991Chr06:13513964..13513988 (25 bp)
AATGATTTCACCGTGATACCCCAAA
LOC_Os06g23160
Os.17321.1.S1_at--354--7471Chr06:13513934..13513958 (25 bp)
GTGTGCTCTTGTCTATTCTAACAGA
LOC_Os06g23160
Os.17321.1.S1_at--525--8131Chr06:13513901..13513925 (25 bp)
GGACTTGACAGTTGAAGCGCTTCTA
LOC_Os06g23160
Os.17321.1.S1_at--781--1651Chr06:13513886..13513910 (25 bp)
AGCGCTTCTAGCGAGATTGATCCAT
LOC_Os06g23160
Os.17321.1.S1_at--1153--10091Chr06:13513845..13513869 (25 bp)
TATGTGTATCCGTTTGTTGGCCCTG
LOC_Os06g23160
Os.17321.1.S1_at--109--4551Chr06:13513826..13513850 (25 bp)
GCCCTGTTCCTGTTATTGATTTGTA
LOC_Os06g23160
Os.17321.1.S1_at--681--2151Chr06:13513761..13513785 (25 bp)
ACACCAAGGTGGTTCTTGTCGCTAT
LOC_Os06g23160
Os.17321.1.S1_at--255--10051Chr06:13513724..13513748 (25 bp)
TATGTTAGCTTTGGGCGGCTTACTC
LOC_Os06g23160
Target Sequence 
CTGTTATTGGCCGTCATTGTCGAATTGGTTCAAATGTAAAGATTGTCAATTCTGTCGTGATGAACCATGTGGTTATTGAA
GATGGTTGTCACATNCAAGGTTCTGTGATATGCAATAATGTGCAACTTCAAGAACGTGCTGTTTTGAAAGATTGTCAGGT
TGGTGCTGGTTATATTGTAACTGCTAGCAGTGAACACAAAGCAGAATCTNTCAGCAAGAAAGTAGAGCGATTTTGATAGT
GTGGTTGACCTTGAACAATTTTGTTTGCTAAGTCAGATACAGCCGTACAAGGAGTTAAGAAGGGAGGGGGTAACATGTAT
TTCGAAAAAATGATTTCACCGTGATACCCCAAAAAAATAGTGTGCTCTTGTCTATTCTAACAGATTGAGCTTGGACTTGA
CAGTTGAAGCGCTTCTAGCGAGATTGATCCATGATATTATGAGTAAACTATGTGTATCCGTTTGTTGGCCCTGTTCCTGT
TATTGATTTGTAATTTTCTTGTCAATNNGGGTGGTACAGTAATTCATTTGGTACACCAAGGTGGTTCTTGTCGCTATTTT
GTAATACATTATGTTAGCTTTGGGCGGCTTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis