Browse Element(s) Details


OsAffx.15573.1.S1_at

Description tigr:9634.m02277
TID=OsAffx.15573.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g231305/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23090OsAffx.15571.1.S1_at10/116+13463026..13468259hypothetical protein
LOC_Os06g23090Os.50619.1.S1_at1/116+13463026..13468259hypothetical protein
LOC_Os06g23100NANA6+13471783..13472250hypothetical protein
LOC_Os06g23114Os.52128.1.S1_at11/116+13475515..13484052Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os06g23114Os.52460.1.S1_at11/116+13475515..13484052Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os06g23114OsAffx.16614.1.S1_x_at1/116+13475515..13484052Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os06g23130OsAffx.15573.1.S1_at5/116+13487228..13489948hypothetical protein
LOC_Os06g23140OsAffx.27781.1.S1_at11/116+13497673..13500215Copper amine oxidase, enzyme domain containing protein
LOC_Os06g23150OsAffx.27782.1.S1_at11/116+13509345..13509756hypothetical protein
LOC_Os06g23160Os.17321.1.S1_at11/116+13513671..13520720Nucleotidyl transferase family protein, expressed
LOC_Os06g23160OsAffx.17544.1.S1_at1/116+13513671..13520720Nucleotidyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15573.1.S1_at--902--131Chr06:13489658..13489682 (25 bp)
ATTAACTTCATTGGTGATGGATCAC
LOC_Os06g23130
OsAffx.15573.1.S1_at--369--8491Chr06:13489687..13489711 (25 bp)
TGGTGAAGGATTTTTCCGGCAAGAA
LOC_Os06g23130
OsAffx.15573.1.S1_at--893--3291Chr06:13489869..13489893 (25 bp)
CAAATTCTGTCAAACGCATGGCCCA
LOC_Os06g23130
OsAffx.15573.1.S1_at--1071--2371Chr06:13489880..13489904 (25 bp)
AAACGCATGGCCCAGGTGGTCATCC
LOC_Os06g23130
OsAffx.15573.1.S1_at--719--9591NONE
TCATCCCACGGGAGGAATGTTCTAG
NONE
OsAffx.15573.1.S1_at--171--8211Chr06:13489911..13489935 (25 bp)
GGAATGTTCTAGCAAACTTTGTCAA
LOC_Os06g23130
OsAffx.15573.1.S1_at--145--3151Chr06:13489935..13489959 (25 bp)
AATTCATGGGCTAGGAGGCCATCCA
NONE
OsAffx.15573.1.S1_at--219--6231Chr06:13489949..13489973 (25 bp)
GAGGCCATCCAACAGAAGAATGCCA
NONE
OsAffx.15573.1.S1_at--232--5271Chr06:13489966..13489990 (25 bp)
GAATGCCAACACATGACTCATTTGT
NONE
OsAffx.15573.1.S1_at--1097--6591Chr06:13489989..13490013 (25 bp)
GTTGGAAAAACACATCGATCAGTAT
NONE
OsAffx.15573.1.S1_at--141--6011Chr06:13490036..13490060 (25 bp)
GAGAGCGAGCTCAAAATGTTATAGA
NONE
Target Sequence 
ATTAACTTCATTGGTGATGGATCACATAATGGTGAAGGATTTTTCCGGCAAGAAGGAAAAGGTAAAAACAACTGGGATAA
CTCAAAAGGAGGAAAAAGCTATTGGGGCAATCTGGTAGAGGTCGAGGATAATGATGGAATTCTGTCTAAGGAAGAGGAAG
ATGGTGGAATAATGGAAGAGGTAGAGGACGAGAAAGTCAGAAAGATCAAAGCAAATTCTGTCAAACGCATGGCCCAGGTG
GTCATCCCACGGGAGGAATGTTCTAGCAAACTTTGTCAAATTCATGGGCTAGGAGGCCATCCAACAGAAGAATGCCAACA
CATGACTCATTTGTTGGAAAAACACATCGATCAGTATGAAAACAATTATGAAGGGGCTCGAGAGCGAGCTCAAAATGTTA
TAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis