Browse Element(s) Details


Os.52128.1.S1_at

Description gb:AK064974.1
DB_XREF= gi:32974992
TID=Os.52128.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001B20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001B20, full insert sequence.
FL= gb:AK064974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2311411/11Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os03g230302/11aberrant pollen transmission 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23070OsAffx.22368.1.S1_x_at1/116+13447494..13452398retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23080OsAffx.20628.1.S1_at3/116+13453972..13456878retrotransposon protein, putative, unclassified
LOC_Os06g23090OsAffx.15571.1.S1_at10/116+13463026..13468259hypothetical protein
LOC_Os06g23090Os.50619.1.S1_at1/116+13463026..13468259hypothetical protein
LOC_Os06g23100NANA6+13471783..13472250hypothetical protein
LOC_Os06g23114Os.52128.1.S1_at11/116+13475515..13484052Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os06g23114Os.52460.1.S1_at11/116+13475515..13484052Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os06g23114OsAffx.16614.1.S1_x_at1/116+13475515..13484052Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os06g23130OsAffx.15573.1.S1_at5/116+13487228..13489948hypothetical protein
LOC_Os06g23140OsAffx.27781.1.S1_at11/116+13497673..13500215Copper amine oxidase, enzyme domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009825biological_processmultidimensional cell growth
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0005507molecular_functioncopper ion binding
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52128.1.S1_at--299--10791Chr06:13478649..13478673 (25 bp)
TTGTTGGCTTCAGCTTGCAGCTAAA
LOC_Os06g23114
Os.52128.1.S1_at--294--10411Chr06:13478684..13478708 (25 bp)
TTATCGGAAGTTGGTGCAGGCTGAC
LOC_Os06g23114
Os.52128.1.S1_at--461--5011Chr06:13478699..13478723 (25 bp)
GCAGGCTGACCTTGATCAATTCTTA
LOC_Os06g23114
Os.52128.1.S1_at--776--792Chr06:13478799..13478823 (25 bp)
ATGTGGAATCTTTGGCTTGGCTATA
LOC_Os06g23114
Os.52128.1.S1_at--495--7072Chr06:13478841..13478865 (25 bp)
GTCAAGGCCCGTGGGTTCTTTCACA
LOC_Os06g23114
Os.52128.1.S1_at--632--1812Chr06:13478939..13478963 (25 bp)
ACCCTCACATTTTCTAGGCCAAAAT
LOC_Os06g23114
Os.52128.1.S1_at--277--10451Chr06:13478974..13478998 (25 bp)
TTACCACCCCTAGCTATAGGACATT
LOC_Os06g23114
Os.52128.1.S1_at--347--5371Chr06:13479027..13479051 (25 bp)
GAAGACTCTAAATTCCTCGTTGGTG
LOC_Os06g23114
Os.52128.1.S1_at--806--5931Chr06:13479109..13479133 (25 bp)
GAGCATGATTTCACTCACTACTACA
LOC_Os06g23114
Os.52128.1.S1_at--564--8112Chr06:13479157..13479181 (25 bp)
GGACTGGCCTTATAGGTGCCGATTC
LOC_Os06g23114
Os.52128.1.S1_at--1080--2372Chr11:22977746..22977769 (24 bp)
AAACTGGCACCTATGGGCATTTTCC
NONE
Target Sequence 
TTGTTGGCTTCAGCTTGCAGCTAAATTGTGGGGGCTTATCGGAAGTTGGTGCAGGCTGACCTTGATCAATTCTTACAACG
ATAGTAAACAAAGTGACATGCATCCAGATAAGACATAGTGTGACCAAACCGACAATTTGGGCTAGAAAGAATGTGGAATC
TTTGGCTTGGCTATAGGTAGGGGTGGTAATGGGTCAAGGCCCGTGGGTTCTTTCACAACCCATCTCAACCCTTAAATATT
TTTAGCACAAAAAAACTACTAAATTTCAGCCCAACCCTTTTTTGGACCCAACCCTCACATTTTCTAGGCCAAAATGTTGG
GCCCATTACCACCCCTAGCTATAGGACATTGCACAACAATGTGCACTAGCTAGTTATGGAAGACTCTAAATTCCTCGTTG
GTGGTTGTGTAGAAGATTGTGGAGTGTATGTGAAGCTCGGGGAGGTTAGGCCATGGTGGTGAGCATGATTTCACTCACTA
CTACAAAAATCTATTAAAACCTTCATAAGGACTGGCCTTATAGGTGCCGATTCATTTAAAACTGGCACCTATGGGCATTT
TCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis