Browse Element(s) Details


Os.52460.1.S1_at

Description gb:AK067262.1
DB_XREF= gi:32977280
TID=Os.52460.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095P11, full insert sequence.
FL= gb:AK067262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2311411/11Copper amine oxidase, enzyme domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23070OsAffx.22368.1.S1_x_at1/116+13447494..13452398retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23080OsAffx.20628.1.S1_at3/116+13453972..13456878retrotransposon protein, putative, unclassified
LOC_Os06g23090OsAffx.15571.1.S1_at10/116+13463026..13468259hypothetical protein
LOC_Os06g23090Os.50619.1.S1_at1/116+13463026..13468259hypothetical protein
LOC_Os06g23100NANA6+13471783..13472250hypothetical protein
LOC_Os06g23114Os.52128.1.S1_at11/116+13475515..13484052Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os06g23114Os.52460.1.S1_at11/116+13475515..13484052Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os06g23114OsAffx.16614.1.S1_x_at1/116+13475515..13484052Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os06g23130OsAffx.15573.1.S1_at5/116+13487228..13489948hypothetical protein
LOC_Os06g23140OsAffx.27781.1.S1_at11/116+13497673..13500215Copper amine oxidase, enzyme domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0005507molecular_functioncopper ion binding
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52460.1.S1_at--221--1451Chr06:13483527..13483551 (25 bp)
AGAAGCAGGTCTGGGTTACGCCGTA
LOC_Os06g23114
Os.52460.1.S1_at--961--1091Chr06:13483566..13483590 (25 bp)
AGTGGGCATCCGGATTATACGCCGA
LOC_Os06g23114
Os.52460.1.S1_at--489--8051Chr06:13483601..13483625 (25 bp)
GGAGATGACAACTTGGCCGCCTGGA
LOC_Os06g23114
Os.52460.1.S1_at--811--10171Chr06:13483754..13483778 (25 bp)
TATACGGTTGGTCTGCACCATGTTC
LOC_Os06g23114
Os.52460.1.S1_at--518--951Chr06:13483788..13483812 (25 bp)
AGGACTTCCCAGTGATGCCAACTAT
LOC_Os06g23114
Os.52460.1.S1_at--307--7331Chr06:13483818..13483842 (25 bp)
GTGCATTAGAGGTCCGTCCATCCAA
LOC_Os06g23114
Os.52460.1.S1_at--994--6011Chr06:13483850..13483874 (25 bp)
GAGAGGAACCCGCTTATCAGAACAA
LOC_Os06g23114
Os.52460.1.S1_at--68--3671Chr06:13483923..13483947 (25 bp)
CTTAATGTGATTGATGCTGCCGTGC
LOC_Os06g23114
Os.52460.1.S1_at--53--4791Chr06:13483938..13483962 (25 bp)
GCTGCCGTGCATCTTATTTATATTT
LOC_Os06g23114
Os.52460.1.S1_at--475--5671Chr06:13483965..13483989 (25 bp)
GACATCTTGTGCGTCTATGATTCGA
LOC_Os06g23114
Os.52460.1.S1_at--774--5671Chr06:13484009..13484033 (25 bp)
GACATTGTTCGCCTTTTGTCCAATA
LOC_Os06g23114
Target Sequence 
AGAAGCAGGTCTGGGTTACGCCGTATAACAAGTCGGAGAAGTGGGCATCCGGATTATACGCCGAGCAAAGCACGGGAGAT
GACAACTTGGCCGCCTGGAGCAAGAGGAACAGAAGTATAAAGGATGAAGACATTGTACTGTGGTATACGGTTGGTCTGCA
CCATGTTCCGTACCAGGAGGACTTCCCAGTGATGCCAACTATCAGCGGTGCATTAGAGGTCCGTCCATCCAACTTCTTCG
AGAGGAACCCGCTTATCAGAACAAAGCCACCCGAAAACTCCCCAAACTGCTCGTGCAGCATTGGAGGATCTGCTTAATGT
GATTGATGCTGCCGTGCATCTTATTTATATTTAAGACATCTTGTGCGTCTATGATTCGATATAGCGGACCATTGGGGAGA
CATTGTTCGCCTTTTGTCCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis