Browse Element(s) Details


Os.4711.1.S1_at

Description gb:AK099441.1
DB_XREF= gi:32984650
TID=Os.4711.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for eukaryotic translation initiation factor 1A (eif-1a-OF2 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020M15, full insert sequence.
FL= gb:AK120036.1 gb:AK099441.1 gb:AK119687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2344011/11Eukaryotic translation initiation factor 1A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23400OsAffx.4915.1.S1_at11/116+13663130..13663813hypothetical protein
LOC_Os06g23410OsAffx.27787.1.S1_at10/116+13668057..13670847hypothetical protein
LOC_Os06g23420Os.54057.1.S1_at11/116+13673055..13675419Exostosin family protein, expressed
LOC_Os06g23430Os.1315.1.S1_at11/116+13676509..13680874Signal recognition particle 19 kDa protein, putative, expressed
LOC_Os06g23440Os.4711.1.S1_at11/116+13684423..13685178Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23440Os.57496.1.S1_x_at11/116+13684423..13685178Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23450OsAffx.4916.1.S1_at10/116+13686769..13687747retrotransposon protein, putative, unclassified
LOC_Os06g23460OsAffx.27788.1.S1_at11/116+13689562..13696927KH domain containing protein, expressed
LOC_Os06g23470NANA6+13698713..13699326hypothetical protein
LOC_Os06g23480NANA6+13700073..13700447hypothetical protein
LOC_Os06g23504OsAffx.15579.1.S1_at11/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.15580.1.S1_at11/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504Os.47883.1.S1_at10/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.4917.1.S1_at10/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.26924.1.S1_x_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504Os.51220.1.S1_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.32296.1.A1_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4711.1.S1_at--125--4351Chr06:13684642..13684666 (25 bp)
CCAGGTGACGCGGATGCTCGGCAAC
LOC_Os06g23440
Os.4711.1.S1_at--682--5611Chr06:13684865..13684889 (25 bp)
GACACCCTCAGGCTCAACGAGGGCG
LOC_Os06g23440
Os.4711.1.S1_at--614--5611Chr06:13684958..13684982 (25 bp)
GACAAGATCTAAGCTCTTTTCTTCT
LOC_Os06g23440
Os.4711.1.S1_at--1024--10551Chr06:13684979..13685003 (25 bp)
TTCTTTCTCCGCAGCTACAATTTAC
LOC_Os06g23440
Os.4711.1.S1_at--25--4851Chr06:13684992..13685016 (25 bp)
GCTACAATTTACTGCTATGTTCTAA
LOC_Os06g23440
Os.4711.1.S1_at--247--3731Chr06:13685013..13685037 (25 bp)
CTAATTAATAGCTATGTGTGGTACT
LOC_Os06g23440
Os.4711.1.S1_at--662--9851Chr06:13685034..13685058 (25 bp)
TACTATGTGGGCTGGCTGTTATGGA
LOC_Os06g23440
Os.4711.1.S1_at--412--811Chr06:13685054..13685078 (25 bp)
ATGGATTGTTTGGTTGCCGGTTTCA
LOC_Os06g23440
Os.4711.1.S1_at--367--6691Chr06:13685066..13685090 (25 bp)
GTTGCCGGTTTCATCTTGTGATATG
LOC_Os06g23440
Os.4711.1.S1_at--409--211Chr06:13685095..13685119 (25 bp)
ATTTGTCATGGTTTGAGGTGGTTAA
LOC_Os06g23440
Os.4711.1.S1_at--713--7891Chr06:13685129..13685153 (25 bp)
GGATTCCGTAACTTTAATCTGGTAT
LOC_Os06g23440
Target Sequence 
CCAGGTGACGCGGATGCTCGGCAACGGCCGCTGCGAGGCCATCTGCGTCGACGGCACCAAGCGCCTCTGCCACATCCGCG
GCAAGATGCACAAGAAGGTGTGGATCGCCGCCGGGGACATCATCCTCGTCGGCCTCCGCGACTACCAGGACGACAAGGCC
GACGTCATCCTCAAGTACATGAACGACGAGGCCCGCCTCCTCAAGGCCTACGGCGAGCTCCCCGACACCCTCAGGCTCAA
CGAGGGCGTCGACGTCGACGGGCCCGAGGACGGCGGCGACCACGACGACTACATCCAGTTCGAGGACGAGGACATCGACA
AGATCTAAGCTCTTTTCTTCTTTCTCCGCAGCTACAATTTACTGCTATGTTCTAATTAATAGCTATGTGTGGTACTATGT
GGGCTGGCTGTTATGGATTGTTTGGTTGCCGGTTTCATCTTGTGATATGAGATATTTGTCATGGTTTGAGGTGGTTAAAT
AATTGTTGGATTCCGTAACTTTAATCTGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis