Browse Element(s) Details

Os.57496.1.S1_x_at

Description

gb:D50570.1
DB_XREF= gi:2645162
TID=Os.57496.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57496 (NCBI UniGene Cluster)
UG_TITLE=MRNA, similar to initiation factor eIF-4c
DEF=Oryza sativa mRNA, similar to initiation factor eIF-4c.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g23440	11/11	Eukaryotic translation initiation factor 1A, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g23400	OsAffx.4915.1.S1_at	11/11	6	+	13663130..13663813	hypothetical protein
LOC_Os06g23410	OsAffx.27787.1.S1_at	10/11	6	+	13668057..13670847	hypothetical protein
LOC_Os06g23420	Os.54057.1.S1_at	11/11	6	+	13673055..13675419	Exostosin family protein, expressed
LOC_Os06g23430	Os.1315.1.S1_at	11/11	6	+	13676509..13680874	Signal recognition particle 19 kDa protein, putative, expressed
LOC_Os06g23440	Os.4711.1.S1_at	11/11	6	+	13684423..13685178	Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23440	Os.57496.1.S1_x_at	11/11	6	+	13684423..13685178	Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23450	OsAffx.4916.1.S1_at	10/11	6	+	13686769..13687747	retrotransposon protein, putative, unclassified
LOC_Os06g23460	OsAffx.27788.1.S1_at	11/11	6	+	13689562..13696927	KH domain containing protein, expressed
LOC_Os06g23470	NA	NA	6	+	13698713..13699326	hypothetical protein
LOC_Os06g23480	NA	NA	6	+	13700073..13700447	hypothetical protein
LOC_Os06g23504	OsAffx.15579.1.S1_at	11/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	OsAffx.15580.1.S1_at	11/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	Os.47883.1.S1_at	10/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	OsAffx.4917.1.S1_at	10/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	OsAffx.26924.1.S1_x_at	1/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	Os.51220.1.S1_at	1/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	OsAffx.32296.1.A1_at	1/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006413	biological_process	translational initiation
GO:0003743	molecular_function	translation initiation factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.57496.1.S1_x_at--50--539	1	Chr06:13684504..13684528 (25 bp)	GAAGAAGGGATCCGCCGCCGGTAGC	LOC_Os06g23440
Os.57496.1.S1_x_at--546--449	1	Chr06:13684520..13684544 (25 bp)	GCCGGTAGCCAAGCCATGCCGAAGA	LOC_Os06g23440
Os.57496.1.S1_x_at--1129--395	1	Chr06:13684522..13684546 (25 bp)	CGGTAGCCAAGCCATGCCGAAGAAC	LOC_Os06g23440
Os.57496.1.S1_x_at--780--783	1	Chr06:13684523..13684547 (25 bp)	GGTAGCCAAGCCATGCCGAAGAACA	LOC_Os06g23440
Os.57496.1.S1_x_at--335--697	1	Chr06:13684524..13684548 (25 bp)	GTAGCCAAGCCATGCCGAAGAACAA	LOC_Os06g23440
Os.57496.1.S1_x_at--479--999	1	Chr06:13684525..13684549 (25 bp)	TAGCCAAGCCATGCCGAAGAACAAG	LOC_Os06g23440
Os.57496.1.S1_x_at--14--437	1	Chr06:13684528..13684552 (25 bp)	CCAAGCCATGCCGAAGAACAAGGGT	LOC_Os06g23440
Os.57496.1.S1_x_at--487--325	1	Chr06:13684529..13684553 (25 bp)	CAAGCCATGCCGAAGAACAAGGGTA	LOC_Os06g23440
Os.57496.1.S1_x_at--751--265	1	Chr06:13684530..13684554 (25 bp)	AAGCCATGCCGAAGAACAAGGGTAA	LOC_Os06g23440
Os.57496.1.S1_x_at--932--95	1	Chr06:13684623..13684647 (25 bp)	AGGACGGGCAGGAGTACGCCCAGGT	LOC_Os06g23440
Os.57496.1.S1_x_at--853--575	1	Chr06:13684625..13684649 (25 bp)	GACGGGCAGGAGTACGCCCAGGTGA	LOC_Os06g23440

Target Sequence

GAAGAAGGGATCCGCCGCCGGTAGCCAAGCCATGCCGAAGAACAAGGGTAANNNAGGGAAGAACCGCAAGANGGGTAAGA
CCGAGGCCGACGACGACAAGCNCGACTGGNTGTCCAANGAGGACGGGCAGGAGTACGCCCAGGTGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis