Browse Element(s) Details

Os.1315.1.S1_at

Description

gb:U19030.1
DB_XREF= gi:624220
TID=Os.1315.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1315 (NCBI UniGene Cluster)
DEF=Oryza sativa signal recognition particle 19 kDa protein subunit SRP19 mRNA, complete cds.
PROD=signal recognition particle 19 kDa proteinsubunit SRP19
FL= gb:U19030.1 gb:AK059915.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g23430	11/11	Signal recognition particle 19 kDa protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g23400	OsAffx.4915.1.S1_at	11/11	6	+	13663130..13663813	hypothetical protein
LOC_Os06g23410	OsAffx.27787.1.S1_at	10/11	6	+	13668057..13670847	hypothetical protein
LOC_Os06g23420	Os.54057.1.S1_at	11/11	6	+	13673055..13675419	Exostosin family protein, expressed
LOC_Os06g23430	Os.1315.1.S1_at	11/11	6	+	13676509..13680874	Signal recognition particle 19 kDa protein, putative, expressed
LOC_Os06g23440	Os.4711.1.S1_at	11/11	6	+	13684423..13685178	Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23440	Os.57496.1.S1_x_at	11/11	6	+	13684423..13685178	Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23450	OsAffx.4916.1.S1_at	10/11	6	+	13686769..13687747	retrotransposon protein, putative, unclassified
LOC_Os06g23460	OsAffx.27788.1.S1_at	11/11	6	+	13689562..13696927	KH domain containing protein, expressed
LOC_Os06g23470	NA	NA	6	+	13698713..13699326	hypothetical protein
LOC_Os06g23480	NA	NA	6	+	13700073..13700447	hypothetical protein
LOC_Os06g23504	OsAffx.15579.1.S1_at	11/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	OsAffx.15580.1.S1_at	11/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	Os.47883.1.S1_at	10/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	OsAffx.4917.1.S1_at	10/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	OsAffx.26924.1.S1_x_at	1/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	Os.51220.1.S1_at	1/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	OsAffx.32296.1.A1_at	1/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006605	biological_process	protein targeting
GO:0005786	cellular_component	signal recognition particle (sensu Eukaryota)
GO:0008312	molecular_function	7S RNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.1315.1.S1_at--356--89	1	Chr06:13680299..13680323 (25 bp)	AGGCGTATCCACGAGATTTCTTCCA	LOC_Os06g23430
Os.1315.1.S1_at--537--971	1	Chr06:13680251..13680275 (25 bp)	TCAAGAAGGATGACGGCTCCCCAGT	LOC_Os06g23430
Os.1315.1.S1_at--562--155	1	Chr06:13676938..13676962 (25 bp)	AGCTTCTTCAACTGCAGGGACTTCA	LOC_Os06g23430
Os.1315.1.S1_at--458--117	1	Chr06:13676879..13676903 (25 bp)	AGTACACCATCTTGTGTCGTTCTTC	LOC_Os06g23430
Os.1315.1.S1_at--193--283	1	Chr06:13676844..13676868 (25 bp)	AAGTTCCCTGAGATTCGTCGATGTC	LOC_Os06g23430
Os.1315.1.S1_at--898--721	1	Chr06:13676828..13676852 (25 bp)	GTCGATGTCTGTTTTGAGGCCTGAA	LOC_Os06g23430
Os.1315.1.S1_at--249--623	1	Chr06:13676813..13676837 (25 bp)	GAGGCCTGAAATTCTGCGTCTCTTC	LOC_Os06g23430
Os.1315.1.S1_at--1142--715	1	Chr06:13676796..13676820 (25 bp)	GTCTCTTCTGTGCTCTGAATTTCTA	LOC_Os06g23430
Os.1315.1.S1_at--167--249	1	Chr06:13676646..13676670 (25 bp)	AACATGCTTATGCTACTAAACCCCT	LOC_Os06g23430
Os.1315.1.S1_at--784--983	1	Chr06:13676630..13676654 (25 bp)	TAAACCCCTTGCAACAGTGGGCTAG	LOC_Os06g23430
Os.1315.1.S1_at--266--51	1	Chr06:13676560..13676584 (25 bp)	ATCGTTCATGTGTCAATTGGGCCTT	LOC_Os06g23430

Target Sequence

AGGCGTATCCACGAGATTTCTTCCAGGTGGGAAGGGTGAGAGTGCAGCTCAAGAAGGATGACGGCTCCCCAGTCAATCCT
GCAATCAAAACAAAGAAGCAGCTGATGATCCAAATCGCGGAGCTAGTCCCCAAGCATCATGGCAGGACTAAGAAGCAGGA
ACCAGCAGCTTCTTCAACTGCAGGGACTTCAAAGGGGAAAGGTGGCAAGAAAAAGAAGTGATGATAGTACACCATCTTGT
GTCGTTCTTCTGTCCATAGGAAGTTCCCTGAGATTCGTCGATGTCTGTTTTGAGGCCTGAAATTCTGCGTCTCTTCTGTG
CTCTGAATTTCTAATTTCTCGGGAAACATCAATCAATGCCCGTATTTCTTGTGATTTGGACTATTGGAAAGAGGAAGATT
GCACTGTTGTTTGCAATGGATAGCTTCCAAGTTATGTTTTTGAATAGAGCTCACCTTGAACATGCTTATGCTACTAAACC
CCTTGCAACAGTGGGCTAGCAGAGGTTATGACTTATGAGGCTAACAGTGGCCATCGGATGATTAATCGTTCATGTGTCAA
TTGGGCCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis