Browse Element(s) Details


Os.50951.1.S1_at

Description gb:AK059666.1
DB_XREF= gi:32969684
TID=Os.50951.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-F01, full insert sequence.
FL= gb:AK059666.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3361011/11RNA-metabolising metallo-beta-lactamase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33590Os.55653.1.S1_at8/112+19975666..19977308U-box domain containing protein, expressed
LOC_Os02g33590OsAffx.19551.1.S1_x_at5/112+19975666..19977308U-box domain containing protein, expressed
LOC_Os02g33600NANA2+19995126..19995953VQ motif family protein
LOC_Os02g33610Os.50951.1.S1_at11/112+20000095..20007983RNA-metabolising metallo-beta-lactamase family protein, expressed
LOC_Os02g33620Os.45957.4.S1_x_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33620OsAffx.14084.1.S1_x_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33620OsAffx.4917.1.S1_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33630OsAffx.24557.1.S1_at11/112+20020771..20024193WD-40 repeat family protein, putative
LOC_Os02g33630Os.30311.1.S1_at1/112+20020771..20024193WD-40 repeat family protein, putative
LOC_Os02g33640Os.31623.1.S1_x_at11/112+20028347..20030613expressed protein
LOC_Os02g33640Os.31623.1.S1_at11/112+20028347..20030613expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50951.1.S1_at--1070--1351Chr02:20007048..20007072 (25 bp)
AGAGCTTAATTCAGATGCGTGGCGA
LOC_Os02g33610
Os.50951.1.S1_at--646--6511Chr02:20007124..20007148 (25 bp)
GATATCTTCTAGCATGTTGAGCCAG
LOC_Os02g33610
Os.50951.1.S1_at--394--7671Chr02:20007149..20007173 (25 bp)
GGGATAAGTCGTACACCAGCACAGT
LOC_Os02g33610
Os.50951.1.S1_at--479--3411Chr02:20007165..20007189 (25 bp)
CAGCACAGTGCAAGTCTCTATGGAC
LOC_Os02g33610
Os.50951.1.S1_at--769--1311Chr02:20007576..20007600 (25 bp)
AGACGTGGCCGTATTTCTTGGACAT
LOC_Os02g33610
Os.50951.1.S1_at--454--4391Chr02:20007637..20007661 (25 bp)
CCAATGATCCCAAGGCCGTAGTTTA
LOC_Os02g33610
Os.50951.1.S1_at--236--6311Chr02:20007708..20007732 (25 bp)
GATGAGATGGCTGCAGCGTGTTCTT
LOC_Os02g33610
Os.50951.1.S1_at--667--8011Chr02:20007773..20007797 (25 bp)
GGAGGCAGGCACTTGGAATGACTAA
LOC_Os02g33610
Os.50951.1.S1_at--525--5711Chr02:20007792..20007816 (25 bp)
GACTAAGCTGCTACGTATTCACCAT
LOC_Os02g33610
Os.50951.1.S1_at--1119--8291Chr02:20007943..20007967 (25 bp)
GGCTTTCAATTGAGCTACCCACATG
LOC_Os02g33610
Os.50951.1.S1_at--880--9951Chr02:20007958..20007982 (25 bp)
TACCCACATGCCTATGCGTGTAAAT
LOC_Os02g33610
Target Sequence 
AGAGCTTAATTCAGATGCGTGGCGAAATGAATGAGCAATTTCAGACTGTGAAAGGGAGAATGGTTCTGTGGGAAGAGATA
TCTTCTAGCATGTTGAGCCAGGGGATAAGTCGTACACCAGCACAGTGCAAGTCTCTATGGACATCATTGGTTCAGAAATA
TGAGGAGAGCAAGAAAGATGAGGAAAGCGTAAAGACGTGGCCGTATTTCTTGGACATGGACAGGGTTTTATCAAGCCAAG
GGGAAATGGCAACCCAATGATCCCAAGGCCGTAGTTTAGTGGTTGTAATTTTGGAGGGTGATGGCATAATCAATCAAGTG
GCAGGATGAGATGGCTGCAGCGTGTTCTTCTCCAGAGAATATACATGCCATAATTCATTCCACGAAAAGGGAGGCAGGCA
CTTGGAATGACTAAGCTGCTACGTATTCACCATGAGTGTGCTACAGGGCTAGGGATAGCTGATATTATTTGATCAACTAT
ACTAGATTAAGTAATTGAATAGCTAAGTTTTGTTGTGCTATTATTTTTGGTGTAAGAAGACACCAAATGCTAATCCGAAG
GCTTTCAATTGAGCTACCCACATGCCTATGCGTGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis