Browse Element(s) Details


OsAffx.19551.1.S1_x_at

Description tigr:9639.m03293
TID=OsAffx.19551.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3649011/11hypothetical protein
LOC_Os12g082905/11U-box domain-containing protein, putative, expressed
LOC_Os02g335905/11U-box domain containing protein, expressed
LOC_Os04g288803/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36470Os.50923.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.31325.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.21343.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.50936.1.S1_x_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.10335.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36480Os.50853.1.S1_at11/1111+21023495..21025848Zinc knuckle family protein, expressed
LOC_Os11g36490OsAffx.19551.1.S1_x_at11/1111+21033768..21034505hypothetical protein
LOC_Os11g36490OsAffx.19551.1.S1_at10/1111+21033768..21034505hypothetical protein
LOC_Os11g36500Os.23629.1.S1_at2/1111+21035759..21038172retrotransposon protein, putative, unclassified
LOC_Os11g36510OsAffx.459.1.S1_at9/1111+21042024..21046343retrotransposon protein, putative, unclassified
LOC_Os11g36520NANA11+21047924..21048982hypothetical protein
LOC_Os11g36530OsAffx.19191.1.S1_at9/1111+21051313..21055110DnaJ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19551.1.S1_x_at--797--1373Chr11:21034054..21034078 (25 bp)
AGAGCGACCGCAACAAGCGCTGCGT
LOC_Os11g36490
OsAffx.19551.1.S1_x_at--329--4614Chr11:21034057..21034081 (25 bp)
GCGACCGCAACAAGCGCTGCGTCGA
LOC_Os11g36490
OsAffx.19551.1.S1_x_at--520--9414Chr11:21034108..21034132 (25 bp)
TCGTCTCCGTCGTCGTCCAGAGCCA
LOC_Os11g36490
OsAffx.19551.1.S1_x_at--799--8013Chr11:21034223..21034247 (25 bp)
GGAGGAGGCCCTGGGCGTGCTCTAC
LOC_Os11g36490
OsAffx.19551.1.S1_x_at--852--8134Chr11:21034292..21034316 (25 bp)
GGACAATGGCGGCTTCCTCGACACC
LOC_Os11g36490
OsAffx.19551.1.S1_x_at--3--4072Chr11:21034425..21034449 (25 bp)
CGATGGCGAGCGTTCCTCGAAGAAG
LOC_Os11g36490
OsAffx.19551.1.S1_x_at--489--873Chr11:21034427..21034451 (25 bp)
ATGGCGAGCGTTCCTCGAAGAAGCA
LOC_Os11g36490
OsAffx.19551.1.S1_x_at--1074--4072Chr11:21034431..21034455 (25 bp)
CGAGCGTTCCTCGAAGAAGCAGGTG
LOC_Os11g36490
OsAffx.19551.1.S1_x_at--967--1632Chr11:21034433..21034457 (25 bp)
AGCGTTCCTCGAAGAAGCAGGTGAG
LOC_Os11g36490
OsAffx.19551.1.S1_x_at--628--2731Chr11:21034444..21034468 (25 bp)
AAGAAGCAGGTGAGCCGGACGACAA
LOC_Os11g36490
OsAffx.19551.1.S1_x_at--748--3471Chr11:21034450..21034474 (25 bp)
CAGGTGAGCCGGACGACAAGGCATC
LOC_Os11g36490
Target Sequence 
AGAGCGACCGCAACAAGCGCTGCGTCGAGGCNACNCCNGGTGCCGTNNAGTTCCTCGTCTCCGTCGTCGTCCAGAGCCAC
GCCGCCGCCTCCACCTACANGTCGGCCANGTCGGACGATGACCTGCTCNACTCGGTGATCGATTCCCNCATNTCGACGAG
CTCGCCGNAGGAGGAGGCCCTGGGCGTGCTCTACTCCCTCAAGCCGTNCGAGCCCACCCTGCGCCGTATCCTNGGCAAGG
ACAATGGCGGCTTCCTCGACACCCTCGCCTCCNTCCTCCTNCTGAAGGCGATGANNTCNGCGATGCCGCCGGAGCGGCTA
GGCTGNCGCCCCNNNCGTCGCAGCATCCGGAGCCGNACCCCCTTACGCTGNCGATGGCGAGCGTTCCTCGAAGAAGCAGG
TGAGCCGGACGACAAGGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19551.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis