Browse Element(s) Details


Os.50936.1.S1_x_at

Description gb:AK059573.1
DB_XREF= gi:32969591
TID=Os.50936.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A04, full insert sequence.
FL= gb:AK059573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g305408/11ubiquitin-specific protease 12, putative, expressed
LOC_Os11g364701/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30500OsAffx.19900.1.S1_at9/1112+18279643..18281922expressed protein
LOC_Os12g30510Os.51942.1.S1_at11/1112+18282447..18284483expressed protein
LOC_Os12g30520Os.52717.1.S1_at11/1112+18286633..18290493Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os12g30529NANA12+18298916..18299486NA
LOC_Os12g30540OsAffx.19901.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.15107.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_at9/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_x_at8/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.21262.1.S1_x_at1/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30550Os.53239.1.S1_at10/1112+18323024..18325115expressed protein
LOC_Os12g30560OsAffx.19902.1.S1_at11/1112+18328020..18328565hypothetical protein
LOC_Os12g30570OsAffx.19903.1.S1_x_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30570OsAffx.19903.1.S1_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30580OsAffx.19904.1.S1_at11/1112+18335742..18336474hypothetical protein
LOC_Os12g30590Os.54180.1.S1_at11/1112+18341141..18345184NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50936.1.S1_x_at--788--9751Chr12:18312003..18312027 (25 bp)
TAATGACCGGTATGAGTTCCCACTT
LOC_Os12g30540
Os.50936.1.S1_x_at--375--1231Chr12:18312017..18312041 (25 bp)
AGTTCCCACTTCAACTTGATCTTGA
LOC_Os12g30540
Os.50936.1.S1_x_at--175--10451Chr12:18312086..18312110 (25 bp)
TTAGAAACCTTTACACTCTTCACAG
LOC_Os12g30540
Os.50936.1.S1_x_at--60--8492Chr12:18312574..18312598 (25 bp)
TGGCGGTCACTACTATGCTTTCATA
LOC_Os12g30540
Os.50936.1.S1_x_at--1162--10311Chr12:18312592..18312616 (25 bp)
TTTCATACGGCCTACGCTATCAGAC
LOC_Os12g30540
Os.50936.1.S1_x_at--381--4431NONE
GCCTACGCTATCAGACCAGTGGTAT
NONE
Os.50936.1.S1_x_at--187--6051Chr12:18313679..18313702 (24 bp)
GAGTTGCCTCAAATAAACCCTGGTT
LOC_Os12g30540
Os.50936.1.S1_x_at--1010--91Chr12:18313733..18313757 (25 bp)
ATTCGAATGCCTACATGCTTGTCTA
LOC_Os12g30540
Os.50936.1.S1_x_at--214--8131NONE
GGACATCGCTGAGCATTTGCGGATA
NONE
Os.50936.1.S1_x_at--371--2431Chr12:18313964..18313988 (25 bp)
AAAAGCTGAAGCTCATCTCTACACC
LOC_Os12g30540
Os.50936.1.S1_x_at--922--9831NONE
TAAAGGTTGCCCGAGATGACGATTT
NONE
Target Sequence 
TAATGACCGGTATGAGTTCCCACTTCAACTTGATCTTGACAGAGATGATGGGAAATATCTTGCTCCTGATGCAGATAGAA
GCATTAGAAACCTTTACACTCTTCACAGNGTTCTTGTTCATAGCGGAGGAGTACATGGCGGTCACTACTATGCTTTCATA
CGGCCTACGCTATCAGACCAGTGGTATAAATTTGATGATGAACGAGTAACAAAAGAAGATACCAAAAAAGCCCTTGAAGA
GCAGTATGGGGGTGAAGAAGAGTTGCCTCAAATAAACCCTGGTTTCAATAACACCCCATTTAAATTCACAAAGTATTCGA
ATGCCTACATGCTTGTCTATATTCGTGAGAGCGACAAGGATAAAATAATGTGTAATGTTGATGAAAAGGACATCGCTGAG
CATTTGCGGATAAGGTTGAAGAAAGAACAAGAAGAGAAGGAACACTAGAAGAAGGAAAAAGCTGAAGCTCATCTCTACAC
CATCATAAAGGTTGCCCGAGATGACGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50936.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis