Browse Element(s) Details


Os.54180.1.S1_at

Description gb:AK102385.1
DB_XREF= gi:32987594
TID=Os.54180.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54180 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033092D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092D07, full insert sequence.
FL= gb:AK102385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3059011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30540OsAffx.19901.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.15107.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_at9/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_x_at8/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.21262.1.S1_x_at1/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30550Os.53239.1.S1_at10/1112+18323024..18325115expressed protein
LOC_Os12g30560OsAffx.19902.1.S1_at11/1112+18328020..18328565hypothetical protein
LOC_Os12g30570OsAffx.19903.1.S1_x_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30570OsAffx.19903.1.S1_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30580OsAffx.19904.1.S1_at11/1112+18335742..18336474hypothetical protein
LOC_Os12g30590Os.54180.1.S1_at11/1112+18341141..18345184NB-ARC domain containing protein, expressed
LOC_Os12g30600Os.52564.1.S1_at8/1112+18346327..18353859retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g30610OsAffx.31946.1.S1_at10/1112+18355171..18358705expressed protein
LOC_Os12g30610Os.20626.1.A1_at2/1112+18355171..18358705expressed protein
LOC_Os12g30620OsAffx.19905.1.S1_at10/1112+18359695..18362403pentatricopeptide, putative
LOC_Os12g30630Os.47463.1.S1_x_at5/1112+18366907..18379812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g30630Os.14491.2.S1_x_at3/1112+18366907..18379812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g30630Os.27037.1.A1_at1/1112+18366907..18379812transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54180.1.S1_at--30--8551Chr12:18344647..18344671 (25 bp)
TGGAGGTTTTCGTTTCTTAGAAGCT
LOC_Os12g30590
Os.54180.1.S1_at--1077--2691Chr12:18344667..18344691 (25 bp)
AAGCTTTGGTGATCCGTGATTGTCC
LOC_Os12g30590
Os.54180.1.S1_at--541--2011Chr12:18344729..18344753 (25 bp)
ACTCTCACAAGCCTTTCGTTGGTGA
LOC_Os12g30590
Os.54180.1.S1_at--169--7951Chr12:18344775..18344799 (25 bp)
GGATACCTGACTGTCTACTGAACCT
LOC_Os12g30590
Os.54180.1.S1_at--383--1251Chr12:18344820..18344844 (25 bp)
AGTTGGTTGGGCTTTCAGGGACAAT
LOC_Os12g30590
Os.54180.1.S1_at--219--6411Chr12:18344899..18344923 (25 bp)
GATCTGTAATTTCCAAGAGCTTCGT
LOC_Os12g30590
Os.54180.1.S1_at--424--1351Chr12:18344914..18344938 (25 bp)
AGAGCTTCGTTTTACTGGTGTACCA
LOC_Os12g30590
Os.54180.1.S1_at--1115--2971Chr12:18344960..18344984 (25 bp)
AATGTGCTTATTGACAAGTGCCCAA
LOC_Os12g30590
Os.54180.1.S1_at--453--2351Chr12:18344998..18345022 (25 bp)
AAAGCAGCCTTTCTCCAGAGGTGAT
LOC_Os12g30590
Os.54180.1.S1_at--52--7852Chr12:18345057..18345081 (25 bp)
GGTACTTGTCTTAACTGATTCCTTT
LOC_Os12g30590
Os.54180.1.S1_at--584--6571Chr12:18345073..18345097 (25 bp)
GATTCCTTTCATCGAATTACCGTGT
LOC_Os12g30590
Target Sequence 
TGGAGGTTTTCGTTTCTTAGAAGCTTTGGTGATCCGTGATTGTCCAAGAATCAGTTGGGAAAATGGGCTGGCATTGCCGC
CCACTCTCACAAGCCTTTCGTTGGTGAGGTGTGGGGATATTTCTAAGTGGATACCTGACTGTCTACTGAACCTATCCTCC
CTTGTCCGCCTGCAGTTGGTTGGGCTTTCAGGGACAATGTTTATTCCTGGGAGTATCTGGAGGAATAATCTTCCATTGCT
AGATTACTTGGAGATCTGTAATTTCCAAGAGCTTCGTTTTACTGGTGTACCAGAAGCAATTGAAGAAATAAACAATGTGC
TTATTGACAAGTGCCCAATGCTGAAAGAACTAAAGCAGCCTTTCTCCAGAGGTGATGTTACCTTCTTGTGGGGGATTCCG
ACTAGTAAATGGTACTTGTCTTAACTGATTCCTTTCATCGAATTACCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis