Browse Element(s) Details


Os.15107.1.S1_at

Description gb:AK058717.1
DB_XREF= gi:32968735
TID=Os.15107.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E02, full insert sequence.
FL= gb:AK058717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3054011/11ubiquitin-specific protease 12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30500OsAffx.19900.1.S1_at9/1112+18279643..18281922expressed protein
LOC_Os12g30510Os.51942.1.S1_at11/1112+18282447..18284483expressed protein
LOC_Os12g30520Os.52717.1.S1_at11/1112+18286633..18290493Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os12g30529NANA12+18298916..18299486NA
LOC_Os12g30540OsAffx.19901.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.15107.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_at9/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_x_at8/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.21262.1.S1_x_at1/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30550Os.53239.1.S1_at10/1112+18323024..18325115expressed protein
LOC_Os12g30560OsAffx.19902.1.S1_at11/1112+18328020..18328565hypothetical protein
LOC_Os12g30570OsAffx.19903.1.S1_x_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30570OsAffx.19903.1.S1_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30580OsAffx.19904.1.S1_at11/1112+18335742..18336474hypothetical protein
LOC_Os12g30590Os.54180.1.S1_at11/1112+18341141..18345184NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15107.1.S1_at--364--2471Chr12:18320187..18320211 (25 bp)
AACAAAGGCCTCGTCTGGATAGCAT
LOC_Os12g30540
Os.15107.1.S1_at--707--10471Chr12:18320283..18320307 (25 bp)
TTACGCTGAGGCCTATATTGCTTCC
LOC_Os12g30540
Os.15107.1.S1_at--428--7911Chr12:18320312..18320336 (25 bp)
GGTTGACGCCGTTGGTGCAGCTTAC
LOC_Os12g30540
Os.15107.1.S1_at--1002--3651Chr12:18320332..18320356 (25 bp)
CTTACTCGTGATGTAGTGGGCGTCA
LOC_Os12g30540
Os.15107.1.S1_at--609--4871Chr12:18320373..18320397 (25 bp)
GCTTTCCATCTTGTTTCCGGGCAAA
LOC_Os12g30540
Os.15107.1.S1_at--58--3191Chr12:18320399..18320423 (25 bp)
CAATTGTGTCGAGTGTGATGGCCCC
LOC_Os12g30540
Os.15107.1.S1_at--110--8871Chr12:18320414..18320438 (25 bp)
TGATGGCCCCGCTAGGATAAGGTAG
LOC_Os12g30540
Os.15107.1.S1_at--1106--4191Chr12:18320543..18320567 (25 bp)
CCCGTTTCTGTTAGCCTTGGAGCAG
LOC_Os12g30540
Os.15107.1.S1_at--219--3431Chr12:18320662..18320686 (25 bp)
CAGTTCCTGTTAGCATAACCTTGTG
LOC_Os12g30540
Os.15107.1.S1_at--744--351Chr12:18320676..18320700 (25 bp)
ATAACCTTGTGTCGGTGCTGTTCTA
LOC_Os12g30540
Os.15107.1.S1_at--234--7791Chr12:18320689..18320713 (25 bp)
GGTGCTGTTCTATTCGTTGTGATTT
LOC_Os12g30540
Target Sequence 
AACAAAGGCCTCGTCTGGATAGCATNCCANNCCAAAGAGAGATCACANAAGTAANGACAACCTCAACAGAAGAAACATGG
CAACNAAACATATGGCCANTTACGCTGAGGCCTATATTGCTTCCCGCTGGTTGACGCCGTTGGTGCAGCTTACTCGTGAT
GTAGTGGGCGTCAGGGATTTTTTTTNCAAGGCTTTCCATCTTGTTTCCGGGCAAAACAATTGTGTCGAGTGTGATGGCCC
CGCTAGGATAAGGTAGATGTTGCTTTATTTGTGTAGAGCAAAGCTGGTACATAAGAAAAAGATTTTGGTAGGGGCATGTA
TACAGAANTTATAGCCGTGACTGATTGCTTTATTTGCTTCTCCCGTTTCTGTTAGCCTTGGAGCAGTGGGAGAATCGTAT
AATGGGGTTTGGTGTTGGTTCCAATTTTCCATGTCTATTGATAAAATGTAAGAGAATAATTTGCCAGATAGTGCAGCTTT
CAGTTCCTGTTAGCATAACCTTGTGTCGGTGCTGTTCTATTCGTTGTGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis