Browse Element(s) Details


Os.21262.1.S1_x_at

Description gb:BQ908388
DB_XREF= gi:22307166
DB_XREF=T007C07
CLONE=T007C07
TID=Os.21262.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.21262 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g305401/11ubiquitin-specific protease 12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30500OsAffx.19900.1.S1_at9/1112+18279643..18281922expressed protein
LOC_Os12g30510Os.51942.1.S1_at11/1112+18282447..18284483expressed protein
LOC_Os12g30520Os.52717.1.S1_at11/1112+18286633..18290493Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os12g30529NANA12+18298916..18299486NA
LOC_Os12g30540OsAffx.19901.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.15107.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_at9/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_x_at8/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.21262.1.S1_x_at1/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30550Os.53239.1.S1_at10/1112+18323024..18325115expressed protein
LOC_Os12g30560OsAffx.19902.1.S1_at11/1112+18328020..18328565hypothetical protein
LOC_Os12g30570OsAffx.19903.1.S1_x_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30570OsAffx.19903.1.S1_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30580OsAffx.19904.1.S1_at11/1112+18335742..18336474hypothetical protein
LOC_Os12g30590Os.54180.1.S1_at11/1112+18341141..18345184NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21262.1.S1_x_at--346--8831Chr12:18320523..18320547 (25 bp)
TGATTGCTTTATTTGCTTCTCCCGT
LOC_Os12g30540
Os.21262.1.S1_x_at--473--10231NONE
TTTGGTTCCAATTTGCCATGGTCTA
NONE
Os.21262.1.S1_x_at--1080--10851Chr06:7572643..7572696 (25 bp)
TTGGTTCCAATTTGCCATGGTCTAG
NONE
Os.21262.1.S1_x_at--114--8571Chr06:7572644..7572696 (24 bp)
TGGTTCCAATTTGCCATGGTCTAGT
NONE
Os.21262.1.S1_x_at--507--6691NONE
GTTCCAATTTGCCATGGTCTAGTGA
NONE
Os.21262.1.S1_x_at--482--10671NONE
TTCCAATTTGCCATGGTCTAGTGAT
NONE
Os.21262.1.S1_x_at--298--9211NONE
TCCAATTTGCCATGGTCTAGTGATA
NONE
Os.21262.1.S1_x_at--68--3131NONE
AATTTGCCATGGTCTAGTGATAAAA
NONE
Os.21262.1.S1_x_at--1107--191NONE
ATTTGCCATGGTCTAGTGATAAAAT
NONE
Os.21262.1.S1_x_at--1083--10271NONE
TTTGCCATGGTCTAGTGATAAAATG
NONE
Os.21262.1.S1_x_at--644--3471NONE
CATGGTCTAGTGATAAAATGGTAAG
NONE
Target Sequence 
TGATTGCTTTATTTGCTTCTCCCGTTNCTGTTAGCCNTGGAGCACNTGGGAGAATCGTATAATGGGGTTTGTTTGGTTCC
AATTTGCCATGGTCTAGTGATAAAATGGTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21262.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis