Browse Element(s) Details


Os.52717.1.S1_at

Description gb:AK068902.1
DB_XREF= gi:32978927
TID=Os.52717.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001H05, full insert sequence.
FL= gb:AK068902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3052011/11Pumilio-family RNA binding repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30460OsAffx.19897.1.S1_at9/1112+18259003..18262874hypothetical protein
LOC_Os12g30480OsAffx.19899.1.S1_at10/1112+18269753..18270540hypothetical protein
LOC_Os12g30490OsAffx.31945.1.S1_at11/1112+18272661..18277079ribosomal protein L4/L1 family protein
LOC_Os12g30500OsAffx.19900.1.S1_at9/1112+18279643..18281922expressed protein
LOC_Os12g30510Os.51942.1.S1_at11/1112+18282447..18284483expressed protein
LOC_Os12g30520Os.52717.1.S1_at11/1112+18286633..18290493Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os12g30529NANA12+18298916..18299486NA
LOC_Os12g30540OsAffx.19901.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.15107.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_at9/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_x_at8/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.21262.1.S1_x_at1/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52717.1.S1_at--312--8751Chr12:18287332..18287356 (25 bp)
TGTACAATATCACTTCCAGGGCTCT
LOC_Os12g30520
Os.52717.1.S1_at--732--6411Chr12:18287178..18287202 (25 bp)
GATCTCCACATTTCATGGGCGACAG
LOC_Os12g30520
Os.52717.1.S1_at--1148--9591Chr12:18287128..18287152 (25 bp)
TCATTTCGGATCTCTGTCGATGCAA
LOC_Os12g30520
Os.52717.1.S1_at--351--2711Chr12:18287066..18287090 (25 bp)
AAGCATCGTGGCCTAAACGTGTTAA
LOC_Os12g30520
Os.52717.1.S1_at--728--1971Chr12:18287008..18287032 (25 bp)
ACTGCATATCTTGATCGACCCATAT
LOC_Os12g30520
Os.52717.1.S1_at--701--10111Chr12:18286977..18287001 (25 bp)
TATGTGATCCAAACAGCGCTCAAGG
LOC_Os12g30520
Os.52717.1.S1_at--322--4571Chr12:18286846..18286870 (25 bp)
GCGCTGTGCTGATCGGAGCCATTAG
LOC_Os12g30520
Os.52717.1.S1_at--364--5871Chr12:18286831..18286855 (25 bp)
GAGCCATTAGGCCACATGTTGCTGC
LOC_Os12g30520
Os.52717.1.S1_at--768--9111Chr12:18286812..18286836 (25 bp)
TGCTGCTCTTCGAAACAACATGTTT
LOC_Os12g30520
Os.52717.1.S1_at--323--2731Chr12:18286748..18286772 (25 bp)
AAGCACTAATCTTGCACCTTTGGGC
LOC_Os12g30520
Os.52717.1.S1_at--1078--10591Chr12:18286718..18286742 (25 bp)
TTCTGGAGTCCACCTGTCAGGCAAT
LOC_Os12g30520
Target Sequence 
TGTACAATATCACTTCCAGGGCTCTTGAGCTGTCAGAGCATCAGTATGGGAACTATGTTGTACAGTATATTCTTGATCTC
CACATTTCATGGGCGACAGATGAAATACTGGACAAGCTGGAAGATCATTTCGGATCTCTGTCGATGCAAAAAAGTAGCAG
CAATGTGGTAGAGAAATGTTTAAAAGAAGCATCGTGGCCTAAACGTGTTAAAATCATTCACGAGCTTATCAATGACCCTA
AGTTACTGCATATCTTGATCGACCCATATGGGAACTATGTGATCCAAACAGCGCTCAAGGAGTGTGAGGATGCTGCAGTA
CGCGCTGTGCTGATCGGAGCCATTAGGCCACATGTTGCTGCTCTTCGAAACAACATGTTTGGGAAGAGAATTCTGTCAAA
AACTTACCTGAAGAACAGGAAGCACTAATCTTGCACCTTTGGGCTTTTCTTCTGGAGTCCACCTGTCAGGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis