Browse Element(s) Details


OsAffx.19897.1.S1_at

Description tigr:9640.m02944
TID=OsAffx.19897.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g304609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30444OsAffx.31590.1.S1_at4/1112+18243117..18243757hypothetical protein
LOC_Os12g30450NANA12+18243988..18244437hypothetical protein
LOC_Os12g30460OsAffx.19897.1.S1_at9/1112+18259003..18262874hypothetical protein
LOC_Os12g30480OsAffx.19899.1.S1_at10/1112+18269753..18270540hypothetical protein
LOC_Os12g30490OsAffx.31945.1.S1_at11/1112+18272661..18277079ribosomal protein L4/L1 family protein
LOC_Os12g30500OsAffx.19900.1.S1_at9/1112+18279643..18281922expressed protein
LOC_Os12g30510Os.51942.1.S1_at11/1112+18282447..18284483expressed protein
LOC_Os12g30520Os.52717.1.S1_at11/1112+18286633..18290493Pumilio-family RNA binding repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19897.1.S1_at--1026--2851Chr12:18261099..18261122 (24 bp)
AAGTGCGGTCAGCAATGCGCGCGGT
LOC_Os12g30460
OsAffx.19897.1.S1_at--828--391Chr12:18261071..18261095 (25 bp)
ATCACCACCAGAGCTGCAGCAAGGA
LOC_Os12g30460
OsAffx.19897.1.S1_at--580--7731Chr12:18260995..18261019 (25 bp)
GGTGCCGCACCGAGACGTTGATGCC
LOC_Os12g30460
OsAffx.19897.1.S1_at--809--3351Chr12:18260988..18261012 (25 bp)
CACCGAGACGTTGATGCCTTTTGAT
LOC_Os12g30460
OsAffx.19897.1.S1_at--848--591Chr12:18260975..18260999 (25 bp)
ATGCCTTTTGATGCTGGCGAGGTCG
LOC_Os12g30460
OsAffx.19897.1.S1_at--528--9431NONE
TCGGGAGGCGGCATGATTTCATCCT
NONE
OsAffx.19897.1.S1_at--382--8351NONE
GGCGGCATGATTTCATCCTTGATTA
NONE
OsAffx.19897.1.S1_at--260--9611Chr12:18259109..18259133 (25 bp)
TCATCCTTGATTACACTGGGAAAGT
LOC_Os12g30460
OsAffx.19897.1.S1_at--269--8651Chr12:18259093..18259117 (25 bp)
TGGGAAAGTGCACCGAATACCATTT
LOC_Os12g30460
OsAffx.19897.1.S1_at--791--5231Chr12:18259079..18259103 (25 bp)
GAATACCATTTTCAACTATGCTCTT
LOC_Os12g30460
OsAffx.19897.1.S1_at--1035--9691Chr12:18259068..18259092 (25 bp)
TCAACTATGCTCTTACTATATTTAG
LOC_Os12g30460
Target Sequence 
AAGTGCGGTCAGCAATGCGCGCGGTGGCATCACCACCAGAGCTGCAGCAAGGAGCAAACCGGGGACAAATGGGAGGGGGG
ATGTAGAGGAGGCCAGCCAGGCCGGGTGCCGCACCGAGACGTTGATGCCTTTTGATGCTGGCGAGGTCGGGAGGCGGCAT
GATTTCATCCTTGATTACACTGGGAAAGTGCACCGAATACCATTTTCAACTATGCTCTTACTATATTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis