Browse Element(s) Details


OsAffx.31945.1.S1_at

Description tigr:9640.m02947
TID=OsAffx.31945.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein L4L1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3049011/11ribosomal protein L4/L1 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30460OsAffx.19897.1.S1_at9/1112+18259003..18262874hypothetical protein
LOC_Os12g30480OsAffx.19899.1.S1_at10/1112+18269753..18270540hypothetical protein
LOC_Os12g30490OsAffx.31945.1.S1_at11/1112+18272661..18277079ribosomal protein L4/L1 family protein
LOC_Os12g30500OsAffx.19900.1.S1_at9/1112+18279643..18281922expressed protein
LOC_Os12g30510Os.51942.1.S1_at11/1112+18282447..18284483expressed protein
LOC_Os12g30520Os.52717.1.S1_at11/1112+18286633..18290493Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os12g30529NANA12+18298916..18299486NA

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0009547cellular_componentplastid ribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31945.1.S1_at--503--3911Chr12:18275737..18275761 (25 bp)
CTGGAAGAGCACGTCATGGAACATT
LOC_Os12g30490
OsAffx.31945.1.S1_at--920--4171Chr12:18275881..18275903 (23 bp)
CCCAGTTTCGTGGTGGTGCAACTAT
LOC_Os12g30490
OsAffx.31945.1.S1_at--829--8091Chr12:18275908..18275932 (25 bp)
GGACCTAAACCACGAAGCCATGCAA
LOC_Os12g30490
OsAffx.31945.1.S1_at--264--1471Chr12:18275945..18275969 (25 bp)
AGAAGGTCCGTCGTCTGGGACTGAA
LOC_Os12g30490
OsAffx.31945.1.S1_at--674--5351Chr12:18275967..18275991 (25 bp)
GAAGATAGCCTTGTCTGCACGGACT
LOC_Os12g30490
OsAffx.31945.1.S1_at--1123--8171Chr12:18276664..18276685 (22 bp)
GGAAGCTTCTGGTCTTTGAGGACTT
LOC_Os12g30490
OsAffx.31945.1.S1_at--806--2671Chr12:18276792..18276816 (25 bp)
AAGCTGGCTACTCAAAATCTCCACT
LOC_Os12g30490
OsAffx.31945.1.S1_at--214--5291Chr12:18276821..18276983 (25 bp)
GAATGTGCTTCCTTCAATTGGACTC
LOC_Os12g30490
OsAffx.31945.1.S1_at--423--31Chr12:18276978..18276999 (22 bp)
ATTGGACTCAACGTCTACAGCATCC
LOC_Os12g30490
OsAffx.31945.1.S1_at--22--1531Chr12:18277003..18277027 (25 bp)
AGCATGACACCCTCGTAATGACTCG
LOC_Os12g30490
OsAffx.31945.1.S1_at--85--7071Chr12:18277017..18277041 (25 bp)
GTAATGACTCGCGATGCTGTGAATC
LOC_Os12g30490
Target Sequence 
CTGGAAGAGCACGTCATGGAACATTGCGTGGTCCCCAGTTTCGTGGTGGTGCAACTATGCATGGACCTAAACCACGAAGC
CATGCAATCAAGTTGCAAAAGAAGGTCCGTCGTCTGGGACTGAAGATAGCCTTGTCTGCACGGACTGCTGAAGGGAAGCT
TCTGGTCTTTGAGGACTTGGAAGTTCCTAGCCACAAGACGAAGAACGTTGTGAGCTATATAAGCCAGATGGAGGACACAA
AGAAAGTGCTACTGGTTGATGGAGGCGATATCGATAAAAAGCTAAAGCTGGCTACTCAAAATCTCCACTACGTGAATGTG
CTTCCTTCAATTGGACTCAACGTCTACAGCATCCTCCAGCATGACACCCTCGTAATGACTCGCGATGCTGTGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis