Browse Element(s) Details


OsAffx.19899.1.S1_at

Description tigr:9640.m02946
TID=OsAffx.19899.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3048010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30460OsAffx.19897.1.S1_at9/1112+18259003..18262874hypothetical protein
LOC_Os12g30480OsAffx.19899.1.S1_at10/1112+18269753..18270540hypothetical protein
LOC_Os12g30490OsAffx.31945.1.S1_at11/1112+18272661..18277079ribosomal protein L4/L1 family protein
LOC_Os12g30500OsAffx.19900.1.S1_at9/1112+18279643..18281922expressed protein
LOC_Os12g30510Os.51942.1.S1_at11/1112+18282447..18284483expressed protein
LOC_Os12g30520Os.52717.1.S1_at11/1112+18286633..18290493Pumilio-family RNA binding repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19899.1.S1_at--84--4411Chr12:18270485..18270509 (25 bp)
GCCAAAGTCAACTTGATGTTGGAGA
LOC_Os12g30480
OsAffx.19899.1.S1_at--1048--6611Chr12:18270468..18270492 (25 bp)
GTTGGAGAAGTCAAGCTCCACCTCT
LOC_Os12g30480
OsAffx.19899.1.S1_at--753--5331Chr12:18270462..18270486 (25 bp)
GAAGTCAAGCTCCACCTCTACTTGA
LOC_Os12g30480
OsAffx.19899.1.S1_at--1063--6551Chr12:18270435..18270459 (25 bp)
GATTCATTGGCTCAAGATTGGACCT
LOC_Os12g30480
OsAffx.19899.1.S1_at--283--1251Chr12:18270421..18270445 (25 bp)
AGATTGGACCTCAGTTTGCATCAGT
LOC_Os12g30480
OsAffx.19899.1.S1_at--378--9651Chr12:18270411..18270435 (25 bp)
TCAGTTTGCATCAGTCCCATGCTAA
LOC_Os12g30480
OsAffx.19899.1.S1_at--518--371Chr12:18270402..18270426 (25 bp)
ATCAGTCCCATGCTAAACAAGCACT
LOC_Os12g30480
OsAffx.19899.1.S1_at--930--8571Chr12:18270365..18270389 (25 bp)
TGGTTGCTGATCGATACGCTCCACG
LOC_Os12g30480
OsAffx.19899.1.S1_at--118--9391Chr12:18270355..18270379 (25 bp)
TCGATACGCTCCACGCTTATTGGTG
LOC_Os12g30480
OsAffx.19899.1.S1_at--400--7731Chr12:18270334..18270358 (25 bp)
GGTGGAGACCATAGATCATAGAGAT
LOC_Os12g30480
OsAffx.19899.1.S1_at--50--8551NONE
TGGAGAGAGAAACTTCCTCGTTGAT
NONE
Target Sequence 
GCCAAAGTCAACTTGATGTTGGAGAAGTCAAGCTCCACCTCTACTTGATTGATTCATTGGCTCAAGATTGGACCTCAGTT
TGCATCAGTCCCATGCTAAACAAGCACTACCTCCGCCTGCTGGTTGCTGATCGATACGCTCCACGCTTATTGGTGGAGAC
CATAGATCATAGAGATGGAGAGAGAAACTTCCTCGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis