Browse Element(s) Details


OsAffx.19901.1.S1_at

Description tigr:9640.m02952
TID=OsAffx.19901.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ubiquitin carboxyl-terminal hydrolase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3054011/11ubiquitin-specific protease 12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30500OsAffx.19900.1.S1_at9/1112+18279643..18281922expressed protein
LOC_Os12g30510Os.51942.1.S1_at11/1112+18282447..18284483expressed protein
LOC_Os12g30520Os.52717.1.S1_at11/1112+18286633..18290493Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os12g30529NANA12+18298916..18299486NA
LOC_Os12g30540OsAffx.19901.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.15107.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_at9/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_x_at8/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.21262.1.S1_x_at1/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30550Os.53239.1.S1_at10/1112+18323024..18325115expressed protein
LOC_Os12g30560OsAffx.19902.1.S1_at11/1112+18328020..18328565hypothetical protein
LOC_Os12g30570OsAffx.19903.1.S1_x_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30570OsAffx.19903.1.S1_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30580OsAffx.19904.1.S1_at11/1112+18335742..18336474hypothetical protein
LOC_Os12g30590Os.54180.1.S1_at11/1112+18341141..18345184NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19901.1.S1_at--690--9911Chr12:18316637..18316661 (25 bp)
TACGAGGTTCTGGACATTCCACTGC
LOC_Os12g30540
OsAffx.19901.1.S1_at--1020--5691Chr12:18316816..18316840 (25 bp)
GACTACCGAAAAACAGCACCATCAG
LOC_Os12g30540
OsAffx.19901.1.S1_at--305--6171Chr12:18316842..18316866 (25 bp)
GATGTGATTACTGACCTAAAAACCA
LOC_Os12g30540
OsAffx.19901.1.S1_at--68--8991Chr12:18317045..18317069 (25 bp)
TGAACTGTCCAATCCTGATGCTGAA
LOC_Os12g30540
OsAffx.19901.1.S1_at--1056--8851Chr12:18317060..18317084 (25 bp)
TGATGCTGAACTCCGCTTGCTTGAA
LOC_Os12g30540
OsAffx.19901.1.S1_at--134--2551Chr12:18317068..18317092 (25 bp)
AACTCCGCTTGCTTGAAGTATTCTA
LOC_Os12g30540
OsAffx.19901.1.S1_at--865--10171Chr12:18317226..18317246 (21 bp)
TATAAGATATTTCCACCTCACGAGA
LOC_Os12g30540
OsAffx.19901.1.S1_at--675--10851Chr12:18317429..18317453 (25 bp)
TTGGCCCACATGATCGGTTGATTCA
LOC_Os12g30540
OsAffx.19901.1.S1_at--831--7911Chr12:18317444..18317468 (25 bp)
GGTTGATTCATGTTTACCATTTCAT
LOC_Os12g30540
OsAffx.19901.1.S1_at--183--571Chr12:18317653..18317677 (25 bp)
ATCCATTTTTGCTGGTTATCCGTGA
LOC_Os12g30540
OsAffx.19901.1.S1_at--286--10271Chr12:18317668..18317692 (25 bp)
TTATCCGTGAAGGTGAAACTGCAGC
LOC_Os12g30540
Target Sequence 
TACGAGGTTCTGGACATTCCACTGCCAGAATTGCAGTGTTTGAAAACTCTTAAAGTTGCATTCCACCATGCAACTAAAGA
TGAGGTTGTAATCCATAGCATAAGACTACCGAAAAACAGCACCATCAGTGATGTGATTACTGACCTAAAAACCAAGGTTG
AACTGTCCAATCCTGATGCTGAACTCCGCTTGCTTGAAGTATTCTATCACAAGATTTATAAGATATTTCCACCTCACGAG
AAAATAGAGAACATAAATGATCAGTACTGGACACTACGTGCTGAGGAGATACCAGAGGAAGAGAAGAACCTTGGCCCACA
TGATCGGTTGATTCATGTTTACCATTTCATGAAAGATCCTAATCAAAATCAGCAGATTCAGAATTTTGGAGATCCATTTT
TGCTGGTTATCCGTGAAGGTGAAACTGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis