Browse Element(s) Details


Os.53239.1.S1_at

Description gb:AK071524.1
DB_XREF= gi:32981547
TID=Os.53239.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53239 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023100D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100D18, full insert sequence.
FL= gb:AK071524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3055010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30529NANA12+18298916..18299486NA
LOC_Os12g30540OsAffx.19901.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.15107.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_at9/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_x_at8/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.21262.1.S1_x_at1/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30550Os.53239.1.S1_at10/1112+18323024..18325115expressed protein
LOC_Os12g30560OsAffx.19902.1.S1_at11/1112+18328020..18328565hypothetical protein
LOC_Os12g30570OsAffx.19903.1.S1_x_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30570OsAffx.19903.1.S1_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30580OsAffx.19904.1.S1_at11/1112+18335742..18336474hypothetical protein
LOC_Os12g30590Os.54180.1.S1_at11/1112+18341141..18345184NB-ARC domain containing protein, expressed
LOC_Os12g30600Os.52564.1.S1_at8/1112+18346327..18353859retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53239.1.S1_at--1043--8331NONE
GGCGGCTTGTCCGTAAAGCCAAGAT
NONE
Os.53239.1.S1_at--707--5171Chr12:18323499..18323523 (25 bp)
GCAAGAAATCAGACCGCCCGAAATC
LOC_Os12g30550
Os.53239.1.S1_at--747--8971Chr12:18323446..18323470 (25 bp)
TGAACACCAACTTCTGATCGATCAG
LOC_Os12g30550
Os.53239.1.S1_at--239--3431Chr12:18323424..18323448 (25 bp)
CAGAGCCTCCATGTCCAGAGGTTAA
LOC_Os12g30550
Os.53239.1.S1_at--380--7851Chr12:18323338..18323362 (25 bp)
GGTACCTTAGTCCTTGTCAAAGGAG
LOC_Os12g30550
Os.53239.1.S1_at--934--8211Chr12:18323275..18323299 (25 bp)
GGCAAAATTATGTCCTTTCCTCTTC
LOC_Os12g30550
Os.53239.1.S1_at--458--1591Chr12:18323245..18323269 (25 bp)
AGCTCTGTCCAACTGAAACCTTCAA
LOC_Os12g30550
Os.53239.1.S1_at--144--2251Chr12:18323207..18323231 (25 bp)
AAATTTGCAACTGCGTCAGTACGGG
LOC_Os12g30550
Os.53239.1.S1_at--802--10011Chr12:18323154..18323178 (25 bp)
TAGAGTTTATCTCGGTCAGTCCCTA
LOC_Os12g30550
Os.53239.1.S1_at--288--2691Chr12:18323101..18323125 (25 bp)
AAGCTCTTACTTTTTCAGTTTGATG
LOC_Os12g30550
Os.53239.1.S1_at--270--1211Chr12:18323085..18323109 (25 bp)
AGTTTGATGTTCCTTTGCTCATGTA
LOC_Os12g30550
Target Sequence 
GGCGGCTTGTCCGTAAAGCCAAGATTGAGATTCTTCTTTGTAAATCAGAAAACTTCAACAGTATAATGTCCAGCAAGAAA
TCAGACCGCCCGAAATCCGCCGAGGAAGAGATCAAGGTCTGATGATGAACACCAACTTCTGATCGATCAGAGCCTCCATG
TCCAGAGGTTAACAAACCATGCTTGAGACAGTGGGAGGCAGCAGCAATGATCTGATTTTAGTAGTAACTAGGGGGTACCT
TAGTCCTTGTCAAAGGAGGAATAGATCATAATATTGTCAGGCATGCATACTATGCAGGCAAAATTATGTCCTTTCCTCTT
CCTTGCAGCTCTGTCCAACTGAAACCTTCAAAAGAAATTAAGCAAAATTTGCAACTGCGTCAGTACGGGGAGATGATGAA
ATTAGTGGATGTAGAAATAGAGTTTATCTCGGTCAGTCCCTAAGGCTGGGACTGGAGGAGTCCTATAATTAAGCTCTTAC
TTTTTCAGTTTGATGTTCCTTTGCTCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis