Browse Element(s) Details


OsAffx.31946.1.S1_at

Description tigr:9640.m02959
TID=OsAffx.31946.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 35-1255
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3061010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30570OsAffx.19903.1.S1_x_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30570OsAffx.19903.1.S1_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30580OsAffx.19904.1.S1_at11/1112+18335742..18336474hypothetical protein
LOC_Os12g30590Os.54180.1.S1_at11/1112+18341141..18345184NB-ARC domain containing protein, expressed
LOC_Os12g30600Os.52564.1.S1_at8/1112+18346327..18353859retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g30610OsAffx.31946.1.S1_at10/1112+18355171..18358705expressed protein
LOC_Os12g30610Os.20626.1.A1_at2/1112+18355171..18358705expressed protein
LOC_Os12g30620OsAffx.19905.1.S1_at10/1112+18359695..18362403pentatricopeptide, putative
LOC_Os12g30630Os.47463.1.S1_x_at5/1112+18366907..18379812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g30630Os.14491.2.S1_x_at3/1112+18366907..18379812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g30630Os.27037.1.A1_at1/1112+18366907..18379812transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31946.1.S1_at--1042--9391Chr12:18355880..18355904 (25 bp)
TCGTCCCGCGGCACAATGTGGTGGA
LOC_Os12g30610
OsAffx.31946.1.S1_at--1003--3191Chr12:18355893..18355917 (25 bp)
CAATGTGGTGGAGCACCTGCGGTCA
LOC_Os12g30610
OsAffx.31946.1.S1_at--251--5091Chr12:18355905..18355929 (25 bp)
GCACCTGCGGTCAATCGGCGGGCTC
LOC_Os12g30610
OsAffx.31946.1.S1_at--814--4651Chr12:18355922..18355946 (25 bp)
GCGGGCTCGGTGACCCAATTGAGAT
LOC_Os12g30610
OsAffx.31946.1.S1_at--193--1551Chr12:18355949..18355973 (25 bp)
AGCATTATGTGAGGTTCAGTCGCCA
LOC_Os12g30610
OsAffx.31946.1.S1_at--236--7891Chr12:18355961..18355985 (25 bp)
GGTTCAGTCGCCAGAGGTTCTACAA
LOC_Os12g30610
OsAffx.31946.1.S1_at--420--271Chr12:18355985..18356009 (25 bp)
ATATGTTTGTGAAGCCGTATCCGGA
LOC_Os12g30610
OsAffx.31946.1.S1_at--1089--3871Chr12:18356083..18356107 (25 bp)
CTGTGGAAGCTGTTTAAGCCGGTGA
LOC_Os12g30610
OsAffx.31946.1.S1_at--563--10291NONE
TTTCCCTCAAAGGTCTAAGAGTGCT
NONE
OsAffx.31946.1.S1_at--703--10731Chr12:18358596..18358620 (25 bp)
TTGAAGAATCGGAATTCACCCGTAG
LOC_Os12g30610
OsAffx.31946.1.S1_at--878--6551Chr12:18358646..18358670 (25 bp)
GATTACCCTGGTTCTGGTGCAAACA
LOC_Os12g30610
Target Sequence 
TCGTCCCGCGGCACAATGTGGTGGAGCACCTGCGGTCAATCGGCGGGCTCGGTGACCCAATTGAGATGAAGCATTATGTG
AGGTTCAGTCGCCAGAGGTTCTACAATATGTTTGTGAAGCCGTATCCGGAGTGCGAGAGGATTTTCGGGGGAATTGTTAG
GGAGAAGGGGAAGGAGGTGAGGCGGTGGCGGCATCCTGTTGGGCTGTGGAAGCTGTTTAAGCCGGTGAAGTATGAGAGTA
CGGAGGAGGATGTCAATAATATGAAAATGCAGCTTCAGGATAAGAAATACCCTTTTTTTTCCCTCAAAGGTCTAAGAGTG
CTACAGGAAAGCAAAGCAACTCCAACCTCTGATGCAACGACTGAGGCTATCGATTTTGAAGAATCGGAATTCACCCGTAG
TGGAAGTATGGGGTTTGAGCTCAATGATTACCCTGGTTCTGGTGCAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis