Browse Element(s) Details


OsAffx.10335.1.S1_at

Description gb:NM_185690.1
DB_XREF= gi:34898465
TID=OsAffx.10335.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g364701/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36410OsAffx.31324.1.S1_at11/1111+20967756..20970788NB-ARC domain containing protein
LOC_Os11g36420Os.21345.1.S1_at11/1111+20974391..20978324sialyltransferase, putative, expressed
LOC_Os11g36430Os.8445.1.S1_at11/1111+20978869..20983802RING-H2 finger protein RHF2a, putative, expressed
LOC_Os11g36440OsAffx.7314.1.S1_at11/1111+20984661..20988746carotenoid isomerase, putative, expressed
LOC_Os11g36450Os.35279.1.S1_at11/1111+20989245..20991948transcription factor jumonji, putative, expressed
LOC_Os11g36460NANA11+20993247..20994542Structural maintenance of chromosome 5, putative
LOC_Os11g36470Os.50923.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.31325.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.21343.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.50936.1.S1_x_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.10335.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36480Os.50853.1.S1_at11/1111+21023495..21025848Zinc knuckle family protein, expressed
LOC_Os11g36490OsAffx.19551.1.S1_x_at11/1111+21033768..21034505hypothetical protein
LOC_Os11g36490OsAffx.19551.1.S1_at10/1111+21033768..21034505hypothetical protein
LOC_Os11g36500Os.23629.1.S1_at2/1111+21035759..21038172retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10335.1.S1_at--1126--3572Chr06:3886967..3886991 (25 bp)
CATTGCCGCGAAATGGAATCGGTTG
NONE
OsAffx.10335.1.S1_at--1093--2292Chr06:3886957..3886981 (25 bp)
AAATGGAATCGGTTGCTCGCCGCCG
NONE
OsAffx.10335.1.S1_at--891--5872Chr06:3886807..3886830 (24 bp)
GAGCCCGCGAGAGCCCAATAAGTGT
NONE
OsAffx.10335.1.S1_at--176--1671Chr06:3848651..3848763 (25 bp)
AGCCCAATAAGTGTTCGATCTCTCC
NONE
OsAffx.10335.1.S1_at--28--9792Chr06:3886700..3886812 (25 bp)
TAAGTGTTCGATCTCTCCCGTTCTT
NONE
OsAffx.10335.1.S1_at--67--3372Chr06:3886570..3886699 (25 bp)
CACCGGCTCCGGGACAAACAGGAGA
NONE
OsAffx.10335.1.S1_at--255--6672Chr06:3886544..3886568 (25 bp)
GTTGCAGCATCAATAATGAGGCGTT
NONE
OsAffx.10335.1.S1_at--846--6212Chr06:3886527..3886551 (25 bp)
GAGGCGTTTGTACGCATCCAATCCA
NONE
OsAffx.10335.1.S1_at--359--6992Chr06:3886518..3886542 (25 bp)
GTACGCATCCAATCCACAACGATAT
NONE
OsAffx.10335.1.S1_at--451--252Chr06:3886495..3886519 (25 bp)
ATATCTTAATATCTATATCCCGGCT
NONE
OsAffx.10335.1.S1_at--749--9753Chr11:21005139..21005264 (24 bp)
TAATATCTATATCCCGGCTATGATG
LOC_Os11g36470
Target Sequence 
CATTGCCGCGAAATGGAATCGGTTGCTCGCCGCCGCCGCCGCCGCCGCCTCCATAGTCCCACACGGCCACCACCTGCCGC
CGCCGCCGAAGCCCCCCGACCCGACCTCCATCTCCGACGAAGCTCCTCATTGCCATCGCGCGGCCCAACTGCCGCCGCGG
CGAGCCCGCGAGAGCCCAATAAGTGTTCGATCTCTCCCGTTCTTCACCGGCTCCGGGACAAACAGGAGAAGTTGCAGCAT
CAATAATGAGGCGTTTGTACGCATCCAATCCACAACGATATATCTTAATATCTATATCCCGGCTATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis