Browse Element(s) Details


OsAffx.31324.1.S1_at

Description tigr:9639.m03284
TID=OsAffx.31324.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RPS2, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3641011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36390Os.25752.1.S1_at11/1111+20941735..20951593BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g36400Os.56294.1.S1_at11/1111+20961065..20963169expressed protein
LOC_Os11g36410OsAffx.31324.1.S1_at11/1111+20967756..20970788NB-ARC domain containing protein
LOC_Os11g36420Os.21345.1.S1_at11/1111+20974391..20978324sialyltransferase, putative, expressed
LOC_Os11g36430Os.8445.1.S1_at11/1111+20978869..20983802RING-H2 finger protein RHF2a, putative, expressed
LOC_Os11g36440OsAffx.7314.1.S1_at11/1111+20984661..20988746carotenoid isomerase, putative, expressed
LOC_Os11g36450Os.35279.1.S1_at11/1111+20989245..20991948transcription factor jumonji, putative, expressed
LOC_Os11g36460NANA11+20993247..20994542Structural maintenance of chromosome 5, putative
LOC_Os11g36470Os.50923.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.31325.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.21343.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.50936.1.S1_x_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.10335.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005622cellular_componentintracellular
GO:0005739cellular_componentmitochondrion
GO:0005886cellular_componentplasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31324.1.S1_at--713--9971Chr11:20968307..20968331 (25 bp)
TACCTCCATGGTTATTTCGTTGATA
LOC_Os11g36410
OsAffx.31324.1.S1_at--651--10531Chr11:20968194..20968218 (25 bp)
TTCATGGATTATTCATCTCCCGCTT
LOC_Os11g36410
OsAffx.31324.1.S1_at--8--471Chr11:20968180..20968204 (25 bp)
ATCTCCCGCTTCTAGAGGATTTGCT
LOC_Os11g36410
OsAffx.31324.1.S1_at--163--7951Chr11:20968164..20968188 (25 bp)
GGATTTGCTGCTATTTTCATGTTCA
LOC_Os11g36410
OsAffx.31324.1.S1_at--363--9731Chr11:20968062..20968086 (25 bp)
TAATACATTCCCCAGTCTTAAAAGG
LOC_Os11g36410
OsAffx.31324.1.S1_at--898--11Chr11:20968014..20968038 (25 bp)
ATTGGTTAGGATCTGCAGCCCGTTC
LOC_Os11g36410
OsAffx.31324.1.S1_at--739--8511Chr11:20967973..20967997 (25 bp)
TGGAATGCCTTCAGATCTCTGCATG
LOC_Os11g36410
OsAffx.31324.1.S1_at--890--10271Chr11:20967926..20967950 (25 bp)
TTTCTTACCGTTCCGAGCAAACTGA
LOC_Os11g36410
OsAffx.31324.1.S1_at--52--6431Chr11:20967848..20967872 (25 bp)
GATCTTGAACCTTCACTTGAACTTT
LOC_Os11g36410
OsAffx.31324.1.S1_at--978--8971Chr11:20967831..20967855 (25 bp)
TGAACTTTACTTTCATGGCCTCTCT
LOC_Os11g36410
OsAffx.31324.1.S1_at--1100--8451Chr11:20967816..20967840 (25 bp)
TGGCCTCTCTGCTGAAGATCAACTA
LOC_Os11g36410
Target Sequence 
TACCTCCATGGTTATTTCGTTGATAGGATCATATGCCAGAAGCTGCACACTGGAGATATTTTTGCAAAACTCAGACGTTT
GGATATAGTACGGTGTTCAAGATTGAATCATATTTCATGGATTATTCATCTCCCGCTTCTAGAGGATTTGCTGCTATTTT
CATGTTCAACATTGCACCAGATTATTGCTACTGCACAAGATGGTGTCGTTAAGACAAATCAGGAAAAGGAAAATCCATCA
GTTAATAATACATTCCCCAGTCTTAAAAGGATGACACTGATCGAAGCTGGTGCATTGGTTAGGATCTGCAGCCCGTTCTT
CTCATTTCCTTCTCTGGAATGCCTTCAGATCTCTGCATGCCCTTTGTTGAATAAACTTCCCTTTCTTACCGTTCCGAGCA
AACTGAAATGTATACGCGGTGAGAATGAATGGTGGGATGGTTTGGAATGGGAAGACCAAGATCTTGAACCTTCACTTGAA
CTTTACTTTCATGGCCTCTCTGCTGAAGATCAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis