Browse Element(s) Details


Os.21343.1.S1_at

Description gb:AK069043.1
DB_XREF= gi:32979067
TID=Os.21343.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008E16, full insert sequence.
FL= gb:AK069043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1185011/11glycoside hydrolase family 47 protein, putative, expressed
LOC_Os11g364701/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11820Os.57052.1.S1_at9/115+6708504..6712370transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11826NANA5+6726204..6726498NA
LOC_Os05g11832Os.14645.1.S1_s_at11/115+6730115..6730992expressed protein
LOC_Os05g11840Os.14645.3.S1_at11/115+6730150..6731413expressed protein
LOC_Os05g11850Os.21343.1.S1_at11/115+6731537..6735668glycoside hydrolase family 47 protein, putative, expressed
LOC_Os05g11860OsAffx.26842.1.S1_at11/115+6740034..6740816Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g11870Os.52111.1.S1_at11/115+6745809..6748287coenzyme A diphosphatase NUDT11, putative, expressed
LOC_Os05g11890NANA5+6751322..6751738retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11900Os.47329.1.A1_at1/115+6753416..6753801hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006487biological_processprotein amino acid N-linked glycosylation
GO:0004559molecular_functionalpha-mannosidase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21343.1.S1_at--539--5391Chr05:6731985..6732009 (25 bp)
GAAGCAGCATCAGAGCCGTTCTTGG
LOC_Os05g11850
Os.21343.1.S1_at--929--1671Chr05:6731972..6731996 (25 bp)
AGCCGTTCTTGGTAGCAACCTCATG
LOC_Os05g11850
Os.21343.1.S1_at--849--2631Chr05:6731956..6731980 (25 bp)
AACCTCATGGAGTTGTCAGCTTGAA
LOC_Os05g11850
Os.21343.1.S1_at--859--671Chr05:6731843..6731867 (25 bp)
ATGAAACTACTCTGATCTGCTGAAA
LOC_Os05g11850
Os.21343.1.S1_at--381--10831Chr05:6731755..6731779 (25 bp)
TTGTGTCAGACATCCCATCATGTTC
LOC_Os05g11850
Os.21343.1.S1_at--635--731Chr05:6731736..6731760 (25 bp)
ATGTTCACAACTTGCTCCCTGCTTA
LOC_Os05g11850
Os.21343.1.S1_at--6--8752Chr11:21006883..21007221 (25 bp)
TGTAAGCTTCTTATCATCTCCAGTT
LOC_Os11g36470
Os.21343.1.S1_at--392--3551Chr05:6731676..6731700 (25 bp)
CATCTCCAGTTGCTGTTCATTGACA
LOC_Os05g11850
Os.21343.1.S1_at--178--5011Chr05:6731644..6731668 (25 bp)
GCATGGTTCATGTTTTTGGCGTGTT
LOC_Os05g11850
Os.21343.1.S1_at--736--7851Chr05:6731611..6731635 (25 bp)
GGTAGTGCTCTACTGTAAGCCTGTA
LOC_Os05g11850
Os.21343.1.S1_at--30--7051Chr05:6731597..6731621 (25 bp)
GTAAGCCTGTAGCAAAATCTCCTAA
LOC_Os05g11850
Target Sequence 
GAAGCAGCATCAGAGCCGTTCTTGGTAGCAACCTCATGGAGTTGTCAGCTTGAAGCTGCAGTGGCATCATTATTAGAAGC
NAGCTCGTGGNATGGAGTTATCGTCATAGATTTGGAGATTGTACTTGTATTTATGGGAAGGTCATGAAACTACTCTGATC
TGCTGAAANACATACNATTTTGAATTAGCTTGTGATTACACTGACATTTGTCTTCCNAGAAATCTTCAATCCNTTGTGTC
AGACATCCCATCATGTTCACAACTTGCTCCCTGCTTACCTGGTGAGTTCAACTAGATTTGTAAGCTTCTTATCATCTCCA
GTTGCTGTTCATTGACAGCATTTTGCATGGTTCATGTTTTTGGCGTGTTTGTGTTATGGTAGTGCTCTACTGTAAGCCTG
TAGCAAAATCTCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis