Browse Element(s) Details


Os.52111.1.S1_at

Description gb:AK064744.1
DB_XREF= gi:32974762
TID=Os.52111.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E02, full insert sequence.
FL= gb:AK064744.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1187011/11coenzyme A diphosphatase NUDT11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11826NANA5+6726204..6726498NA
LOC_Os05g11832Os.14645.1.S1_s_at11/115+6730115..6730992expressed protein
LOC_Os05g11840Os.14645.3.S1_at11/115+6730150..6731413expressed protein
LOC_Os05g11850Os.21343.1.S1_at11/115+6731537..6735668glycoside hydrolase family 47 protein, putative, expressed
LOC_Os05g11860OsAffx.26842.1.S1_at11/115+6740034..6740816Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g11870Os.52111.1.S1_at11/115+6745809..6748287coenzyme A diphosphatase NUDT11, putative, expressed
LOC_Os05g11890NANA5+6751322..6751738retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11900Os.47329.1.A1_at1/115+6753416..6753801hypothetical protein
LOC_Os05g11910Os.7727.1.S1_at10/115+6766991..6770735GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g11920OsAffx.14647.1.S1_at9/115+6771238..6772094hypothetical protein
LOC_Os05g11930OsAffx.14648.1.S1_at11/115+6772668..6773045hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52111.1.S1_at--153--4291Chr05:6746376..6746400 (25 bp)
CCTGCGCTTGTTTCTATTGTCACAG
LOC_Os05g11870
Os.52111.1.S1_at--742--10231Chr05:6746390..6746414 (25 bp)
TATTGTCACAGTTCTTGAGCCCTTC
LOC_Os05g11870
Os.52111.1.S1_at--840--1431Chr05:6747663..6747687 (25 bp)
AGAACGGACTCCATGTAACTCCTGT
LOC_Os05g11870
Os.52111.1.S1_at--306--9811Chr05:6747678..6747702 (25 bp)
TAACTCCTGTAATCGGCATTCTTTC
LOC_Os05g11870
Os.52111.1.S1_at--779--5671Chr05:6747749..6747773 (25 bp)
GACATCTTTGATGCACCTCTAGAGA
LOC_Os05g11870
Os.52111.1.S1_at--559--9231Chr05:6747943..6747967 (25 bp)
TCCAGTCCAGTCTTTTGAGTACCAG
LOC_Os05g11870
Os.52111.1.S1_at--348--10491Chr05:6747998..6748022 (25 bp)
TTAACGGCACACATTCTGACTCGTG
LOC_Os05g11870
Os.52111.1.S1_at--363--9111Chr05:6748021..6748045 (25 bp)
TGCTGCAGCAGTCGTTTTACCGAGA
LOC_Os05g11870
Os.52111.1.S1_at--831--10111Chr05:6748076..6748100 (25 bp)
TATGTGAACTCACCCTCTGGAGATA
LOC_Os05g11870
Os.52111.1.S1_at--15--8751Chr05:6748143..6748167 (25 bp)
TGTAATTCTAGCATTTATCCCCTCC
LOC_Os05g11870
Os.52111.1.S1_at--1026--3831Chr05:6748180..6748204 (25 bp)
CTGCTTGTGCCTGTCTATAGAAAAT
LOC_Os05g11870
Target Sequence 
CCTGCGCTTGTTTCTATTGTCACAGTTCTTGAGCCCTTCTTGTCCAAGAACGGACTCCATGTAACTCCTGTAATCGGCAT
TCTTTCGGATAAAGCTTTATTCAAGCCTGTCTTGAATGAATCTGAAGTGGCAGACATCTTTGATGCACCTCTAGAGATGT
TCCTGAAGGATGATAACCGGAAAACACAAGAATCGAATTGGATGGGCATGAATATTCCAGTCCAGTCTTTTGAGTACCAG
TCAGAGGACAAAACGTTTGTGATTTGGGGCTTAACGGCACACATTCTGACTCGTGCTGCAGCAGTCGTTTTACCGAGAGA
ACCATCATTTGTTGAATTTCGACCAAGATATGTGAACTCACCCTCTGGAGATACGAATGAAACAAAACGCTGATGCAATA
CCATAATCGTCAATATGTAATTCTAGCATTTATCCCCTCCATTCAGAGGCAGCTGCTTGTGCCTGTCTATAGAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis