Browse Element(s) Details


OsAffx.14648.1.S1_at

Description tigr:9633.m01061
TID=OsAffx.14648.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1193011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11870Os.52111.1.S1_at11/115+6745809..6748287coenzyme A diphosphatase NUDT11, putative, expressed
LOC_Os05g11890NANA5+6751322..6751738retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11900Os.47329.1.A1_at1/115+6753416..6753801hypothetical protein
LOC_Os05g11910Os.7727.1.S1_at10/115+6766991..6770735GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g11920OsAffx.14647.1.S1_at9/115+6771238..6772094hypothetical protein
LOC_Os05g11930OsAffx.14648.1.S1_at11/115+6772668..6773045hypothetical protein
LOC_Os05g11940OsAffx.442.1.S1_x_at5/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.30226.4.S1_x_at5/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.30226.2.S1_s_at4/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.30226.2.S1_x_at4/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.30226.4.S1_at4/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.24587.1.S1_x_at3/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.30226.1.S1_x_at2/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.442.1.S1_at2/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14648.1.S1_at--745--8371Chr05:6772698..6772722 (25 bp)
GGCGTCACCACAATCATCTTGGTGT
LOC_Os05g11930
OsAffx.14648.1.S1_at--672--2231Chr05:6772707..6772731 (25 bp)
ACAATCATCTTGGTGTGCTCCACGG
LOC_Os05g11930
OsAffx.14648.1.S1_at--758--411Chr05:6772710..6772734 (25 bp)
ATCATCTTGGTGTGCTCCACGGTGG
LOC_Os05g11930
OsAffx.14648.1.S1_at--888--9391Chr05:6772826..6772850 (25 bp)
TCGTCAAGCAGAAGTGCGCACTCCG
LOC_Os05g11930
OsAffx.14648.1.S1_at--143--1471Chr05:6772835..6772859 (25 bp)
AGAAGTGCGCACTCCGCCAGGCGGA
LOC_Os05g11930
OsAffx.14648.1.S1_at--412--3491Chr05:6772852..6772876 (25 bp)
CAGGCGGAGCGCACACTATTCAGAG
LOC_Os05g11930
OsAffx.14648.1.S1_at--498--4691Chr05:6772855..6772879 (25 bp)
GCGGAGCGCACACTATTCAGAGAAA
LOC_Os05g11930
OsAffx.14648.1.S1_at--43--5891Chr05:6772858..6772882 (25 bp)
GAGCGCACACTATTCAGAGAAAAGT
LOC_Os05g11930
OsAffx.14648.1.S1_at--286--6091Chr05:6772963..6772987 (25 bp)
GAGTAAGTGTTTCAGGAGAGCATAA
LOC_Os05g11930
OsAffx.14648.1.S1_at--372--6011Chr05:6772978..6773002 (25 bp)
GAGAGCATAATGTGCCATTGCCCTA
LOC_Os05g11930
OsAffx.14648.1.S1_at--617--9771Chr05:6772985..6773009 (25 bp)
TAATGTGCCATTGCCCTATGATGTC
LOC_Os05g11930
Target Sequence 
GGCGTCACCACAATCATCTTGGTGTGCTCCACGGTGGCGGCGGCAGCGGCGGCGGCTGGGACGCTGGCGGTGGCTGACGC
GGGCGCTGCGGCTGGCGGTGGCGTGGGAGGCGGCGCTCGACGCCAACCTCGTCAAGCAGAAGTGCGCACTCCGCCAGGCG
GAGCGCACACTATTCAGAGAAAAGTGTTGAACCAACTAGGAGCAACAATTGAATTGGCAGGGGATGGAGCTAAGGCTGTG
GATATATTCAAAGATGCTATTGAGAGAGTAAGTGTTTCAGGAGAGCATAATGTGCCATTGCCCTATGATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis