Browse Element(s) Details


OsAffx.26842.1.S1_at

Description tigr:9633.m01054
TID=OsAffx.26842.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1186011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11826NANA5+6726204..6726498NA
LOC_Os05g11832Os.14645.1.S1_s_at11/115+6730115..6730992expressed protein
LOC_Os05g11840Os.14645.3.S1_at11/115+6730150..6731413expressed protein
LOC_Os05g11850Os.21343.1.S1_at11/115+6731537..6735668glycoside hydrolase family 47 protein, putative, expressed
LOC_Os05g11860OsAffx.26842.1.S1_at11/115+6740034..6740816Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g11870Os.52111.1.S1_at11/115+6745809..6748287coenzyme A diphosphatase NUDT11, putative, expressed
LOC_Os05g11890NANA5+6751322..6751738retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11900Os.47329.1.A1_at1/115+6753416..6753801hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26842.1.S1_at--3--7211Chr05:6740561..6740585 (25 bp)
GTCGTCCTCGGGATCAGCTTCGGCT
LOC_Os05g11860
OsAffx.26842.1.S1_at--1090--9611Chr05:6740518..6740542 (25 bp)
TCATCCTCTGCATCATCCGGTGGTA
LOC_Os05g11860
OsAffx.26842.1.S1_at--754--391Chr05:6740507..6740531 (25 bp)
ATCATCCGGTGGTACCTCGTGTGGA
LOC_Os05g11860
OsAffx.26842.1.S1_at--1127--5391Chr05:6740424..6740448 (25 bp)
GAAGCGGTCGGCTGGGCTGGATGAC
LOC_Os05g11860
OsAffx.26842.1.S1_at--565--4491Chr05:6740382..6740406 (25 bp)
GCCGGTGTTCGCGTACAAGCAAAGG
LOC_Os05g11860
OsAffx.26842.1.S1_at--591--8331Chr05:6740254..6740278 (25 bp)
GGCTGCCCAGATGCATGCATGTCTT
LOC_Os05g11860
OsAffx.26842.1.S1_at--596--791Chr05:6740212..6740236 (25 bp)
ATGTGTGGCTCAGGGAGCACTCGAC
LOC_Os05g11860
OsAffx.26842.1.S1_at--220--1071Chr05:6740201..6740225 (25 bp)
AGGGAGCACTCGACGTGCCCCGTCT
LOC_Os05g11860
OsAffx.26842.1.S1_at--136--7791Chr05:6740147..6740171 (25 bp)
GGTGCGGCGCGCGTTGAGAAGTTGC
LOC_Os05g11860
OsAffx.26842.1.S1_at--1008--5331Chr05:6740130..6740154 (25 bp)
GAAGTTGCCGGAGAGCAGCGCGTCG
LOC_Os05g11860
OsAffx.26842.1.S1_at--252--9351Chr05:6740108..6740132 (25 bp)
TCGCGGGCATTGACATCGCCGGTGC
LOC_Os05g11860
Target Sequence 
GTCGTCCTCGGGATCAGCTTCGGCTCCCTCCTCGCCATCCTGCTCATCCTCTGCATCATCCGGTGGTACCTCGTGTGGAG
GTCGGCGCGACCACGGCGGGACGACGGCGCCGCGGATGAGGCGGTTGGGTCAGCCAAGAAGCGGTCGGCTGGGCTGGATG
ACGACGCCATCGCGGCGCTGCCGGTGTTCGCGTACAAGCAAAGGGAGGAGGGCGGCGGCGGCGCGGTGGGGGCAGCAGAG
GAGGAGGAAGAGGAACGGGAGTGCGCGGTGTGCCTCGCCGTGATGGCCGACGGGGAGGCGGCGCGGCGGCTGCCCAGATG
CATGCATGTCTTCCACCGGGGCTGCGTCGATGTGTGGCTCAGGGAGCACTCGACGTGCCCCGTCTGCCGCGCCGAGGTGG
TTGTTAGGCCGGCCGGTGCGGCGCGCGTTGAGAAGTTGCCGGAGAGCAGCGCGTCGCGGGCATTGACATCGCCGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis