Browse Element(s) Details


Os.50853.1.S1_at

Description gb:AK059001.1
DB_XREF= gi:32969019
TID=Os.50853.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G10, full insert sequence.
FL= gb:AK059001.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3648011/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36470Os.50923.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.31325.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.21343.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.50936.1.S1_x_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.10335.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36480Os.50853.1.S1_at11/1111+21023495..21025848Zinc knuckle family protein, expressed
LOC_Os11g36490OsAffx.19551.1.S1_x_at11/1111+21033768..21034505hypothetical protein
LOC_Os11g36490OsAffx.19551.1.S1_at10/1111+21033768..21034505hypothetical protein
LOC_Os11g36500Os.23629.1.S1_at2/1111+21035759..21038172retrotransposon protein, putative, unclassified
LOC_Os11g36510OsAffx.459.1.S1_at9/1111+21042024..21046343retrotransposon protein, putative, unclassified
LOC_Os11g36520NANA11+21047924..21048982hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50853.1.S1_at--647--5492Chr11:21155288..21155412 (25 bp)
GAACACCAAGTCTGATCGTATGAAC
NONE
Os.50853.1.S1_at--269--4032Chr11:21025278..21025302 (25 bp)
CGTATGAACGGTGAATCATCTGCAT
LOC_Os11g36480
Os.50853.1.S1_at--394--5251Chr11:21025290..21025314 (25 bp)
GAATCATCTGCATATAGTCGGAAAA
LOC_Os11g36480
Os.50853.1.S1_at--426--3332Chr11:21025676..21025700 (25 bp)
CACTCATGTCCGGTTTGGAAGAAGC
LOC_Os11g36480
Os.50853.1.S1_at--537--3711Chr11:21025700..21025724 (25 bp)
CTAGCTGGAAGCTAGTTTTTGACAT
LOC_Os11g36480
Os.50853.1.S1_at--182--10332Chr11:21156298..21156322 (25 bp)
TTTTGCCGTTCTGTTTACAAACACA
NONE
Os.50853.1.S1_at--287--2191Chr11:21025747..21025771 (25 bp)
ACACAATTGATCATCACTTGTGCCT
LOC_Os11g36480
Os.50853.1.S1_at--618--371Chr11:21025759..21025783 (25 bp)
ATCACTTGTGCCTGCAAGGGCTGTT
LOC_Os11g36480
Os.50853.1.S1_at--465--4472Chr11:21156339..21156363 (25 bp)
GCCTGCAAGGGCTGTTTCTGTATCT
NONE
Os.50853.1.S1_at--96--5191Chr11:21025772..21025796 (25 bp)
GCAAGGGCTGTTTCTGTATCTTAAA
LOC_Os11g36480
Os.50853.1.S1_at--1154--7571Chr11:21025776..21025800 (25 bp)
GGGCTGTTTCTGTATCTTAAATTAC
LOC_Os11g36480
Target Sequence 
GAACACCAAGTCTGATCGTATGAACGGTGAATCATCTGCATATAGTCGGAAAAAAGGCAAAGGCAAGAAAGATTTTGGCA
CTAGATCAGCTCCTCATGATGCTCGCAAGACAAGTAAAAGGAAAAGCCCCTTATTTGAGGAAAGAAGGAACTCATCTCAT
TTTAAGTCCAAAGCTAGGGGTGGTTGGATTGCAGACGATGCGGATGACCAGCCATACAAGAAGTGCAAACCCAATGTGTG
GGCTTCTCCATCTACCCCTAAGAAGCAATACAATAACCATCAGTTCTCTTCTGGTGGTGACTACTCAACTCCTCAGTCTT
CAAGATGGCAGAAACACGGTTTCGCATCGCCGAGCGCAACTTACTCACCAAACACAAGGAAGCATAGCTTTTCATCGTCG
AGATTCGCCAGCAACACTCATGTCCGGTTTGGAAGAAGCTAGCTGGAAGCTAGTTTTTGACATTTTTTTGCCGTTCTGTT
TACAAACACAATTGATCATCACTTGTGCCTGCAAGGGCTGTTTCTGTATCTTAAATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis