Browse Element(s) Details


OsAffx.19551.1.S1_at

Description tigr:9639.m03293
TID=OsAffx.19551.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3649010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36470Os.50923.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.31325.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.21343.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.50936.1.S1_x_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.10335.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36480Os.50853.1.S1_at11/1111+21023495..21025848Zinc knuckle family protein, expressed
LOC_Os11g36490OsAffx.19551.1.S1_x_at11/1111+21033768..21034505hypothetical protein
LOC_Os11g36490OsAffx.19551.1.S1_at10/1111+21033768..21034505hypothetical protein
LOC_Os11g36500Os.23629.1.S1_at2/1111+21035759..21038172retrotransposon protein, putative, unclassified
LOC_Os11g36510OsAffx.459.1.S1_at9/1111+21042024..21046343retrotransposon protein, putative, unclassified
LOC_Os11g36520NANA11+21047924..21048982hypothetical protein
LOC_Os11g36530OsAffx.19191.1.S1_at9/1111+21051313..21055110DnaJ domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19551.1.S1_at--2--4072Chr11:21034425..21034449 (25 bp)
CGATGGCGAGCGTTCCTCGAAGAAG
LOC_Os11g36490
OsAffx.19551.1.S1_at--700--6233Chr11:21034426..21034450 (25 bp)
GATGGCGAGCGTTCCTCGAAGAAGC
LOC_Os11g36490
OsAffx.19551.1.S1_at--490--873Chr11:21034427..21034451 (25 bp)
ATGGCGAGCGTTCCTCGAAGAAGCA
LOC_Os11g36490
OsAffx.19551.1.S1_at--704--8473Chr11:21034428..21034452 (25 bp)
TGGCGAGCGTTCCTCGAAGAAGCAG
LOC_Os11g36490
OsAffx.19551.1.S1_at--145--8393Chr11:21034429..21034453 (25 bp)
GGCGAGCGTTCCTCGAAGAAGCAGG
LOC_Os11g36490
OsAffx.19551.1.S1_at--696--4613Chr11:21034430..21034454 (25 bp)
GCGAGCGTTCCTCGAAGAAGCAGGT
LOC_Os11g36490
OsAffx.19551.1.S1_at--1075--4072Chr11:21034431..21034455 (25 bp)
CGAGCGTTCCTCGAAGAAGCAGGTG
LOC_Os11g36490
OsAffx.19551.1.S1_at--373--5872Chr11:21034432..21034456 (25 bp)
GAGCGTTCCTCGAAGAAGCAGGTGA
LOC_Os11g36490
OsAffx.19551.1.S1_at--968--1632Chr11:21034433..21034457 (25 bp)
AGCGTTCCTCGAAGAAGCAGGTGAG
LOC_Os11g36490
OsAffx.19551.1.S1_at--629--2731Chr11:21034444..21034468 (25 bp)
AAGAAGCAGGTGAGCCGGACGACAA
LOC_Os11g36490
Target Sequence 
CGATGGCGAGCGTTCCTCGAAGAAGCAGGTGAGCCGGACGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis