Browse Element(s) Details


Os.23629.1.S1_at

Description gb:NM_188087.1
DB_XREF= gi:34903257
TID=Os.23629.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23629 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g365002/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36470Os.50923.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.31325.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.21343.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.50936.1.S1_x_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.10335.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36480Os.50853.1.S1_at11/1111+21023495..21025848Zinc knuckle family protein, expressed
LOC_Os11g36490OsAffx.19551.1.S1_x_at11/1111+21033768..21034505hypothetical protein
LOC_Os11g36490OsAffx.19551.1.S1_at10/1111+21033768..21034505hypothetical protein
LOC_Os11g36500Os.23629.1.S1_at2/1111+21035759..21038172retrotransposon protein, putative, unclassified
LOC_Os11g36510OsAffx.459.1.S1_at9/1111+21042024..21046343retrotransposon protein, putative, unclassified
LOC_Os11g36520NANA11+21047924..21048982hypothetical protein
LOC_Os11g36530OsAffx.19191.1.S1_at9/1111+21051313..21055110DnaJ domain containing protein
LOC_Os11g36550OsAffx.19193.1.S1_at11/1111+21060523..21062235hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23629.1.S1_at--968--3111Chr01:9641196..9641220 (25 bp)
AATTTTTGGTGTGCCGCGTCATAGC
NONE
Os.23629.1.S1_at--174--7051Chr01:9641156..9641180 (25 bp)
GTAAAGGTATACTACACACGTGTCA
NONE
Os.23629.1.S1_at--771--2171Chr01:9640726..9641165 (25 bp)
ACACGTGTCATAGATCTGGACCAAA
NONE
Os.23629.1.S1_at--48--8551Chr01:9640710..9640733 (24 bp)
TGGACCAAATCATCCCTATCTTCTT
NONE
Os.23629.1.S1_at--253--10691Chr01:9640675..9640699 (25 bp)
TTCCAATCTCTACCCTGTTCATCTT
NONE
Os.23629.1.S1_at--371--472Chr11:21038031..21038159 (25 bp)
ATCTCCTTCTCCCTTGGAGTAGGAG
LOC_Os11g36500
Os.23629.1.S1_at--157--3612Chr11:21038020..21038042 (23 bp)
CTTGGAGTAGGAGAGCTTCTTCCAG
LOC_Os11g36500
Os.23629.1.S1_at--917--2091NONE
ACATCCGGCCGGGTTTGCATTGGTT
NONE
Os.23629.1.S1_at--727--4491Chr01:9639174..9639194 (21 bp)
GCCGGGTTTGCATTGGTTGTCAAAT
NONE
Os.23629.1.S1_at--120--7091Chr01:9639156..9639180 (25 bp)
GTCAAATAATTCGACTACCAAGATT
NONE
Os.23629.1.S1_at--218--8351Chr01:9639083..9639107 (25 bp)
GGCTGGGTATTTTGAATCACCTCAA
NONE
Target Sequence 
AATTTTTGGTGTGCCGCGTCATAGCGGGAAACGGGGAACTGTAAAGGTATACTACACACGTGTCATAGATCTGGACCAAA
TCATCCCTATCTTCTTCCTCATTCTCTTCCAATCTCTACCCTGTTCATCTTCCATCTCCTTCTCCCTTGGAGTAGGAGAG
CTTCTTCCAGATAAACATGGGGAACCCCGACGTGGAGGCCCGCATCCTGTGACCCCGGCGGAAATAAAACGGCGCAGGAG
CACGGCAGCCATGGGCACGGAGGGTTGCGCCGGCGAGAGCAGCAAGTGCGTGAGGCGGAGCGCGAGCACATCCGGCCGGG
TTTGCATTGGTTGTCAAATAATTCGACTACCAAGATTTATTGGAATCATCAATGGTATGATGGTGGTTATGCATGGGTTT
TGTTTGGCTGGGTATTTTGAATCACCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis