Browse Element(s) Details


OsAffx.19193.1.S1_at

Description tigr:9639.m03299
TID=OsAffx.19193.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3655011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36500Os.23629.1.S1_at2/1111+21035759..21038172retrotransposon protein, putative, unclassified
LOC_Os11g36510OsAffx.459.1.S1_at9/1111+21042024..21046343retrotransposon protein, putative, unclassified
LOC_Os11g36520NANA11+21047924..21048982hypothetical protein
LOC_Os11g36530OsAffx.19191.1.S1_at9/1111+21051313..21055110DnaJ domain containing protein
LOC_Os11g36550OsAffx.19193.1.S1_at11/1111+21060523..21062235hypothetical protein
LOC_Os11g36560OsAffx.31338.1.S1_at11/1111+21065313..21070948Zinc finger, C3HC4 type family protein
LOC_Os11g36570OsAffx.19195.1.S1_at11/1111+21083311..21083736hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19193.1.S1_at--56--832Chr11:21060645..21060669 (25 bp)
ATGGTTCTGCATGTTAGACCTTAAC
LOC_Os11g36550
OsAffx.19193.1.S1_at--775--2632Chr11:21060728..21060752 (25 bp)
AACCTCGCTGCCATGGTTTGGAGAA
LOC_Os11g36550
OsAffx.19193.1.S1_at--46--4011Chr11:21060863..21060887 (25 bp)
CGTGCATCGTCTTCGTATTCTGGAA
LOC_Os11g36550
OsAffx.19193.1.S1_at--554--10211Chr11:21060878..21060902 (25 bp)
TATTCTGGAAGAGCGCTACCATGAC
LOC_Os11g36550
OsAffx.19193.1.S1_at--1035--9971Chr11:21060894..21060918 (25 bp)
TACCATGACCACACGACGAGATCGA
LOC_Os11g36550
OsAffx.19193.1.S1_at--560--5391Chr11:21061963..21061987 (25 bp)
GAAGCTTCCGCGAGCAACAGGCAAT
LOC_Os11g36550
OsAffx.19193.1.S1_at--1161--191Chr11:21062001..21062025 (25 bp)
ATTTCGCCTCTTGTGCATTCATAGC
LOC_Os11g36550
OsAffx.19193.1.S1_at--910--292Chr11:21062021..21062045 (25 bp)
ATAGCTTTGTGCTCCAGCCAAGTGA
LOC_Os11g36550
OsAffx.19193.1.S1_at--275--2271Chr11:21062105..21062129 (25 bp)
AAATCATGGTCGTCATACAGTGCCC
LOC_Os11g36550
OsAffx.19193.1.S1_at--909--332Chr11:21062119..21062143 (25 bp)
ATACAGTGCCCAGATCTGATCAACT
LOC_Os11g36550
OsAffx.19193.1.S1_at--511--6652Chr11:21062152..21062176 (25 bp)
GTTGATATCTCTAAACTTGCCAATA
LOC_Os11g36550
Target Sequence 
ATGGTTCTGCATGTTAGACCTTAACAGTGGGAGCAAGAGGTCGGAGGTGGGAGGCGGGATGAGGCAGTGGGCTCGACGTG
GCCAACCTCGCTGCCATGGTTTGGAGAAGGCAGAGGTTGAATACGGGGGAGAAAGCCGGCGGCTAGGGTGGGAGCCTACG
AGGCATGGCGCCGGGGACGCGGGAGAAGCCGAGTGGGGAAGGAATCGGGCCGCCTCCACGTGCATCGTCTTCGTATTCTG
GAAGAGCGCTACCATGACCACACGACGAGATCGACAGGAAGCTTCCGCGAGCAACAGGCAATTCCTCATCACTCCATTTC
GCCTCTTGTGCATTCATAGCTTTGTGCTCCAGCCAAGTGAACTGAACTTTGAGGTTGGATATATCAATGTGATCTATTCG
AGCATAGACTCTTGGAATGAAATCATGGTCGTCATACAGTGCCCAGATCTGATCAACTTCAATCCTGTTGATATCTCTAA
ACTTGCCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis