Browse Element(s) Details


OsAffx.31338.1.S1_at

Description tigr:9639.m03300
TID=OsAffx.31338.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3656011/11Zinc finger, C3HC4 type family protein
LOC_Os11g369709/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36510OsAffx.459.1.S1_at9/1111+21042024..21046343retrotransposon protein, putative, unclassified
LOC_Os11g36520NANA11+21047924..21048982hypothetical protein
LOC_Os11g36530OsAffx.19191.1.S1_at9/1111+21051313..21055110DnaJ domain containing protein
LOC_Os11g36550OsAffx.19193.1.S1_at11/1111+21060523..21062235hypothetical protein
LOC_Os11g36560OsAffx.31338.1.S1_at11/1111+21065313..21070948Zinc finger, C3HC4 type family protein
LOC_Os11g36570OsAffx.19195.1.S1_at11/1111+21083311..21083736hypothetical protein
LOC_Os11g36580NANA11+21090202..21092329hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31338.1.S1_at--348--6492Chr11:21318341..21318365 (25 bp)
GATATTTCCTTCTGTCACCCTGGAC
LOC_Os11g36970
OsAffx.31338.1.S1_at--788--2312Chr11:21318389..21318413 (25 bp)
AAAGGGCAGTACACTCATTGATTTG
LOC_Os11g36970
OsAffx.31338.1.S1_at--62--3612Chr11:21318404..21318428 (25 bp)
CATTGATTTGACGACTGACAGTAGA
LOC_Os11g36970
OsAffx.31338.1.S1_at--695--2572Chr11:21318458..21318482 (25 bp)
AACGGAGAATCTTTCTGAAGCACAA
LOC_Os11g36970
OsAffx.31338.1.S1_at--821--2952Chr11:21318525..21318549 (25 bp)
AATGGCCACGTTGCCAATGGTTTTG
LOC_Os11g36970
OsAffx.31338.1.S1_at--606--2972Chr11:21318540..21318564 (25 bp)
AATGGTTTTGGCAATAATTCTGGGC
LOC_Os11g36970
OsAffx.31338.1.S1_at--12--372Chr11:21318947..21318971 (25 bp)
ATAATTCTGGGCCAGGCTGCCCTTC
LOC_Os11g36970
OsAffx.31338.1.S1_at--723--1792Chr11:21318976..21319000 (25 bp)
ACCCCAACTATTTTTTCATATCCTG
LOC_Os11g36970
OsAffx.31338.1.S1_at--1053--2511Chr11:21065594..21065618 (25 bp)
AACTTCGAAGATGACCGCACATGTG
LOC_Os11g36560
OsAffx.31338.1.S1_at--477--551Chr11:21065375..21065399 (25 bp)
ATCCGGGACTGGAAAACCAAGTATG
LOC_Os11g36560
OsAffx.31338.1.S1_at--344--5593Chr11:21319262..21319288 (25 bp)
GAAATTATTCTTTCTCATTTAGTAC
LOC_Os11g36970
Target Sequence 
GATATTTCCTTCTGTCACCCTGGACTCTTACATCTCCCTTGGCAAGAAAAAGGGCAGTACACTCATTGATTTGACGACTG
ACAGTAGAAGTAGTAGAAAGGATCCTGGAAATGAACAAACGGAGAATCTTTCTGAAGCACAAAAGGAGAGTCTTTCTTCT
GAAAAAAACTCATCCTTGCCCAAAAATGGCCACGTTGCCAATGGTTTTGGCAATAATTCTGGGCCAGGCTGCCCTTCCCC
AACCCCAACTATTTTTTCATATCCTGATCCAGAATTCCATAACTTCGAAGATGACCGCACATGTGAGAAGTTTGAACCTG
GGCAGATTTGGGCTTTATACAGTGATGTTGATAAATTCCCCAAGTTCTATGGTTGGATAAGCAAAGTCGAGCGACAACCG
TTCATAGTGCATTTGATCTGGCTTGAGGCTTCTCCTGAATATGAGCAGGAGAAACGGTGGTTGGAGCAGGACTTACCAGT
CTCTTGTGGTAAATTTAAAATCCGGGACTGGAAAACCAAGTATGAGAGAAATTATTCTTTCTCATTTAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis