Browse Element(s) Details


Os.2330.1.S1_at

Description gb:AF049356.1
DB_XREF= gi:4105638
GEN=Pds
TID=Os.2330.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2330 (NCBI UniGene Cluster)
DEF=Oryza sativa phytoene desaturase precursor (Pds) mRNA, complete cds.
PROD=phytoene desaturase precursor
FL= gb:AF049356.1 gb:AK058668.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0857011/11Phytoene dehydrogenase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08530OsAffx.12783.1.S1_at11/113+4363730..4368503Alanine aminotransferase 2, putative, expressed
LOC_Os03g08540OsAffx.3174.1.S1_at10/113+4369289..4372130hypothetical protein
LOC_Os03g08550Os.9080.1.S1_at11/113+4376362..4382056leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g08560OsAffx.12784.1.S1_at11/113+4382356..4387421ATPase 10, plasma membrane-type, putative
LOC_Os03g08570Os.2330.1.S1_at11/113+4388192..4393919Phytoene dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g08570OsAffx.7731.1.S1_at1/113+4388192..4393919Phytoene dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g08580Os.21260.1.S1_at11/113+4395750..4398234expressed protein
LOC_Os03g08590OsAffx.12785.1.S1_at11/113+4398190..4398499hypothetical protein
LOC_Os03g08600Os.50009.1.S1_at11/113+4407955..4413278glycogenin glucosyltransferase, putative, expressed
LOC_Os03g08610Os.9148.1.S1_at11/113+4413677..4417010leucine-rich repeat family protein, putative, expressed
LOC_Os03g08620Os.9079.1.S1_at1/113+4416899..4418991B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016117biological_processcarotenoid biosynthesis
GO:0016120biological_processcarotene biosynthesis
GO:0009507cellular_componentchloroplast
GO:0016166molecular_functionphytoene dehydrogenase activity
GO:0016719molecular_functioncarotene 7,8-desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2330.1.S1_at--1085--2751Chr03:4393283..4393307 (25 bp)
AAGACTATCCCGGACTGTGAACCTT
LOC_Os03g08570
Os.2330.1.S1_at--525--4291Chr03:4393313..4393337 (25 bp)
CCTCTGCAAAGATCACCGATTGAAG
LOC_Os03g08570
Os.2330.1.S1_at--282--10631Chr03:4393381..4393405 (25 bp)
TTCGATGGAGGGTGCAGTTCTATCT
LOC_Os03g08570
Os.2330.1.S1_at--335--10571Chr03:4393398..4393422 (25 bp)
TTCTATCTGGGAAGCTTTGTGCTCA
LOC_Os03g08570
Os.2330.1.S1_at--202--1571Chr03:4393410..4393434 (25 bp)
AGCTTTGTGCTCAGTCTGTAGTGGA
LOC_Os03g08570
Os.2330.1.S1_at--200--5351Chr03:4393602..4393626 (25 bp)
GAAGTTCCTGTTGCCTCCTAGTTGT
LOC_Os03g08570
Os.2330.1.S1_at--935--6671Chr03:4393611..4393635 (25 bp)
GTTGCCTCCTAGTTGTAGTCAGGAC
LOC_Os03g08570
Os.2330.1.S1_at--641--7111Chr03:4393628..4393652 (25 bp)
GTCAGGACTATTCCCAATGGTGTGT
LOC_Os03g08570
Os.2330.1.S1_at--945--2971Chr03:4393643..4393667 (25 bp)
AATGGTGTGTGTGTCATCATCCCCT
LOC_Os03g08570
Os.2330.1.S1_at--868--6351Chr03:4393734..4393758 (25 bp)
GATGCCTATTTTGGTCTTATCATAT
LOC_Os03g08570
Os.2330.1.S1_at--426--5731Chr03:4393778..4393802 (25 bp)
GACTGAGAGCTGATGCCGATATGCC
LOC_Os03g08570
Target Sequence 
AAGACTATCCCGGACTGTGAACCTTGCCGNCCTCTGCAAAGATCACCGATTGAAGGGTTNTATNTAGCTGGTGACTACAC
AAAGCAGAAATATTTGGCTTCGATGGAGGGTGCAGTTCTATCTGGGAAGCTTTGTGCTCAGTCTGTAGTGGAGGATTATA
AAATGCTATNTCGTAGGAGCCTGAAAAGTCTGCAGTCNGAAGTTCCTGTTGCCTCCTAGTTGTAGTCAGGACTATTCCCA
ATGGTGTGTGTGTCATCATCCCCTAGTCAGTTTTTTTNTATTTAGTGGGTGCCCAACTCTCCNCCAATTTACACATGATG
GAACTTGAAAGATGCCTATTTTGGTCTTATCATATTTCTGTAAAGTTGATTTGTGACTGAGAGCTGATGCCGATATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis