Browse Element(s) Details


Os.9080.1.S1_at

Description gb:AK100621.1
DB_XREF= gi:32985830
TID=Os.9080.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108F23, full insert sequence.
FL= gb:AK112046.1 gb:AK100621.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0855011/11leucine-rich repeat transmembrane protein kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08500Os.12889.1.S1_x_at11/113+4351353..4352577AP2 domain containing protein, expressed
LOC_Os03g08510OsAffx.25020.1.S1_at11/113+4356986..4357174hypothetical protein
LOC_Os03g08520Os.51546.1.S1_at11/113+4358785..4359853expressed protein
LOC_Os03g08530OsAffx.12783.1.S1_at11/113+4363730..4368503Alanine aminotransferase 2, putative, expressed
LOC_Os03g08540OsAffx.3174.1.S1_at10/113+4369289..4372130hypothetical protein
LOC_Os03g08550Os.9080.1.S1_at11/113+4376362..4382056leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g08560OsAffx.12784.1.S1_at11/113+4382356..4387421ATPase 10, plasma membrane-type, putative
LOC_Os03g08570Os.2330.1.S1_at11/113+4388192..4393919Phytoene dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g08570OsAffx.7731.1.S1_at1/113+4388192..4393919Phytoene dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g08580Os.21260.1.S1_at11/113+4395750..4398234expressed protein
LOC_Os03g08590OsAffx.12785.1.S1_at11/113+4398190..4398499hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9080.1.S1_at--270--10031Chr03:4381411..4381435 (25 bp)
TAGACCGAGGTCAGAGCAGTCACTT
LOC_Os03g08550
Os.9080.1.S1_at--372--2151Chr03:4381479..4381503 (25 bp)
ACAGAATGGTCGATCCTGCGCTGAA
LOC_Os03g08550
Os.9080.1.S1_at--932--5311Chr03:4381501..4381525 (25 bp)
GAAGGGTCTGTACCCTGCCAAGTCT
LOC_Os03g08550
Os.9080.1.S1_at--997--7471Chr03:4381555..4381678 (25 bp)
GTGTGTCCAGCCTGAACCAGAATTC
LOC_Os03g08550
Os.9080.1.S1_at--1105--7731Chr03:4381696..4381720 (25 bp)
GGTGGTGCAAGCATTGGTTCGTCTT
LOC_Os03g08550
Os.9080.1.S1_at--812--6711Chr03:4381712..4381736 (25 bp)
GTTCGTCTTGTCCAGAGGGCCAACA
LOC_Os03g08550
Os.9080.1.S1_at--550--5751Chr03:4381754..4381778 (25 bp)
GACGGAGATACTTCGTCGCGCCGAA
LOC_Os03g08550
Os.9080.1.S1_at--590--3712Chr03:4381822..4381846 (25 bp)
CTAGCTTTTCCTGTTACATCTCAAA
LOC_Os03g08550
Os.9080.1.S1_at--89--6892Chr03:4381849..4381873 (25 bp)
GTATTTATTTTGTTCGCCTATCGCC
LOC_Os03g08550
Os.9080.1.S1_at--1124--10631Chr03:4381861..4381885 (25 bp)
TTCGCCTATCGCCTATTGGAGAGAA
LOC_Os03g08550
Os.9080.1.S1_at--543--8692Chr03:4381967..4381991 (25 bp)
TGTGCCATTGTATCCTGTCTACAGA
LOC_Os03g08550
Target Sequence 
TAGACCGAGGTCAGAGCAGTCACTTGTGCNGGTGGGCGACTCCACAGCTCCATGACATCGATGCATTGGACAGAATGGTC
GATCCTGCGCTGAAGGGTCTGTACCCTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGCCTGA
ACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTCGTCTTGTCCAGAGGGCCAACATGACGAAGAGAA
TGCTCGACGGAGATACTTCGTCGCGCCGAACAGACGACCAAGAACAAGATTTCATATGACAAAAACNACACCCCTAGCTT
TTCCTGTTACATCTCAAATTGTATTTATTTTGTTCGCCTATCGCCTATTGGAGAGAAGAATGGAAGGAGAAATAGAAAAG
AAAGTCAGTTTCATCAGTACATAATCACAGGTGTTGCTTGATATATNNNNTGTAGGACCAGGTGTGCCATTGTATCCTGT
CTACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis