Browse Element(s) Details


OsAffx.25020.1.S1_at

Description tigr:9631.m00796
TID=OsAffx.25020.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0851011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08480Os.10398.1.S1_at11/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08480Os.10398.1.S2_at3/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08490Os.23028.1.S1_s_at11/113+4346390..4347501AP2 domain containing protein, expressed
LOC_Os03g08500Os.12889.1.S1_x_at11/113+4351353..4352577AP2 domain containing protein, expressed
LOC_Os03g08510OsAffx.25020.1.S1_at11/113+4356986..4357174hypothetical protein
LOC_Os03g08520Os.51546.1.S1_at11/113+4358785..4359853expressed protein
LOC_Os03g08530OsAffx.12783.1.S1_at11/113+4363730..4368503Alanine aminotransferase 2, putative, expressed
LOC_Os03g08540OsAffx.3174.1.S1_at10/113+4369289..4372130hypothetical protein
LOC_Os03g08550Os.9080.1.S1_at11/113+4376362..4382056leucine-rich repeat transmembrane protein kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25020.1.S1_at--1052--10491Chr03:4357119..4357143 (25 bp)
TTCAACGCACAACTGAACTGGAACT
LOC_Os03g08510
OsAffx.25020.1.S1_at--682--2591Chr03:4357116..4357140 (25 bp)
AACGCACAACTGAACTGGAACTGGA
LOC_Os03g08510
OsAffx.25020.1.S1_at--206--2571Chr03:4357104..4357128 (25 bp)
AACTGGAACTGGATAGGAAGGCTGC
LOC_Os03g08510
OsAffx.25020.1.S1_at--719--2551Chr03:4357098..4357122 (25 bp)
AACTGGATAGGAAGGCTGCCAGGCT
LOC_Os03g08510
OsAffx.25020.1.S1_at--1090--4771Chr03:4357084..4357108 (25 bp)
GCTGCCAGGCTGGAAGGGATTCCTA
LOC_Os03g08510
OsAffx.25020.1.S1_at--998--3811Chr03:4357083..4357107 (25 bp)
CTGCCAGGCTGGAAGGGATTCCTAG
LOC_Os03g08510
OsAffx.25020.1.S1_at--666--7671Chr03:4357039..4357093 (25 bp)
GGGATTCCTAGGCTTCTCATGAAAT
LOC_Os03g08510
OsAffx.25020.1.S1_at--589--7931Chr03:4357038..4357092 (25 bp)
GGATTCCTAGGCTTCTCATGAAATC
LOC_Os03g08510
OsAffx.25020.1.S1_at--235--91Chr03:4357036..4357090 (25 bp)
ATTCCTAGGCTTCTCATGAAATCAA
LOC_Os03g08510
OsAffx.25020.1.S1_at--902--4271Chr03:4357033..4357087 (25 bp)
CCTAGGCTTCTCATGAAATCAAAAT
LOC_Os03g08510
OsAffx.25020.1.S1_at--346--8291Chr03:4357029..4357052 (24 bp)
GGCTTCTCATGAAATCAAAATCTTC
LOC_Os03g08510
Target Sequence 
TTCAACGCACAACTGAACTGGAACTGGATAGGAAGGCTGCCAGGCTGGAAGGGATTCCTAGGCTTCTCATGAAATCAAAA
TCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis