Browse Element(s) Details


Os.47816.1.A1_at

Description gb:CA759127
DB_XREF= gi:25803173
DB_XREF=BR060014A10A07.ab1
CLONE=BR060014A10A07.ab1
TID=Os.47816.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47816 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566481.1 (A.thaliana) Expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0843011/11SacI homology domain containing protein, expressed
LOC_Os01g685241/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08410OsAffx.12780.1.S1_at11/113+4290409..4293430dimethylaniline monooxygenase, putative, expressed
LOC_Os03g08420OsAffx.18485.5.S1_at10/113+4298894..4301620hypothetical protein
LOC_Os03g08430Os.47816.1.A1_at11/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08430Os.28416.1.S1_at10/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08440Os.10138.2.S1_a_at11/113+4315859..431806540S ribosomal protein SA, putative, expressed
LOC_Os03g08450Os.48055.1.S1_at11/113+4318567..4321853Eukaryotic translation initiation factor 3 subunit 11 family protein, expressed
LOC_Os03g08460Os.11120.1.S1_at11/113+4322842..4324818AP2 domain containing protein, expressed
LOC_Os03g08470Os.6009.3.S1_a_at11/113+4327853..4329648AP2 domain containing protein, expressed
LOC_Os03g08480Os.10398.1.S1_at11/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08480Os.10398.1.S2_at3/113+4336420..4339667SAP-like protein BP-73, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009826biological_processunidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005794cellular_componentGolgi apparatus
GO:0004439molecular_functionphosphoinositide 5-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47816.1.A1_at--930--6691Chr03:4308799..4308823 (25 bp)
GTTCCTAGCAATATGAAAGATGCCA
LOC_Os03g08430
Os.47816.1.A1_at--764--1291Chr03:4308816..4308840 (25 bp)
AGATGCCAGCTTGCTTTGTTTTGTA
LOC_Os03g08430
Os.47816.1.A1_at--260--1231Chr03:4308905..4308929 (25 bp)
AGTTCATTTGTTTGCTACATTGTGA
LOC_Os03g08430
Os.47816.1.A1_at--329--10251Chr03:4309000..4309024 (25 bp)
TTTGTGTGCGTGTGTCTATCTGCAT
LOC_Os03g08430
Os.47816.1.A1_at--645--3991Chr03:4309008..4309032 (25 bp)
CGTGTGTCTATCTGCATATCTTTCA
LOC_Os03g08430
Os.47816.1.A1_at--888--6811Chr03:4309038..4309062 (25 bp)
GTTTTTGTTCATATATTCACGCTTG
LOC_Os03g08430
Os.47816.1.A1_at--3--9691Chr03:4309054..4309078 (25 bp)
TCACGCTTGTAGTTGAACCTGGGCA
LOC_Os03g08430
Os.47816.1.A1_at--801--5432Chr03:4309068..4309092 (25 bp)
GAACCTGGGCAATTCCAGTTGTTCT
LOC_Os03g08430
Os.47816.1.A1_at--453--4351Chr03:4309082..4309106 (25 bp)
CCAGTTGTTCTGTGTGTGCAATTAA
LOC_Os03g08430
Os.47816.1.A1_at--816--5191Chr03:4309099..4309123 (25 bp)
GCAATTAATATCACTTTGCCTTTAA
LOC_Os03g08430
Os.47816.1.A1_at--884--371Chr03:4309108..4309129 (22 bp)
ATCACTTTGCCTTTAAGTATACCAA
LOC_Os03g08430
Target Sequence 
GTTCCTAGCAATATGAAAGATGCCAGCTTGCTTTGTTTTGTATCTGGACATATCATAGTGCTTGTATTCATTTATCCTNT
TTGTAGTTTTCCTTCNTCGTAATATTNTCAGTTCATTTGTTTGCTACATTGTGATGAGACAATGTGCACTATNGGCGCCA
AAGTGTCCTTGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTTGTGTGCGTGTGTCTATCTGCATATCTTTCAGAT
AAGTTTTTGTTCATATATTCACGCTTGTAGTTGAACCTGGGCAATTCCAGTTGTTCTGTGTGTGCAATTAATATCACTTT
GCCTTTAAGTATACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47816.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis